Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2111 ATGGGTTCTAACTGTGAAGAGATTGATGGTGAAGAAAATGATCCATGCCTATCTGCTTTGCTTCTAAGCTTCAGCCCAATGGTTTACACTGCTGTGTTGAATGCTTCCATTGAGCTCAACTTGTTCGAGATCATTGCTAAAGCAACAAAAACAACAACCCCACTTGGCGTTTCAGCTTCTGAGATTGCTTCTCAGCTTCCAATTCAGCACAAAAAACTGCCCCAAAGGCTTGATCGCATGCTGTCTGTTCTTGCAAGTCACTCTCTTCTCACCTGCTCTACACTCACAAATCAAGATGGTAAGGTCCAAAGACTCTTTCAGCTTTCACCTTCCGGAAAGTACTTCACCAATGCAGAAGCCACTGCTTCTTTGGCCTTGTTCACAACGTTTATGAATCATCCAAAGCTTGTTCAGGCATTCCTTAATTTCAAGGAGATAGTTCTTGACTGTGATAAGGGCCTATACATGAAAGTTCATGGAATGCCTATTTTTGAAGGCATACAATCTGATCCAACATGGAATCATATCTTCAATGAAGCAATGGCCAATATATGCAGAATAGAGATGACAAAGATACTTGAAATATACAGTGGATTTGAAGGAATATCACTGCTTATTGATGTGGGAGGAGGAGTAGGGCAAAGTTTGAATATCATAATCTCTAAGTATCCTTCCATAAAGGGTGTCAATTTTGATCTTCCACAAGTAATAAAACAAGCTCCACCTTATCCAGGAATTGAACATGTTGAAGGAGACATGTTTGAAAGTGTTCCAAAAGGTGATGCCATACTATTGAAGGGCATATTGCACAATTGGTCGGATGAAAATTGTTTGAAAGTTCTAAATAATTGCTACAAAGCTTTGCCAGAAAATGGAAAAGTGGTTGTTGTAGATTTCATAATGCCTGAAGCAATTGGTTCTTCTGAAGCAGATAAGATGGTTGCTAGCTTTGATAACCTGATGTTTCTTGATGGAGGAAGTGAAAGAACAGAGAAAGAGTTTATGAATTTATGCCAAATTTCTGCATTTTCTTCTTTCAGAGTTGTTTCTCGTGCCTTTACTGCTCTAGGAGTAATGGAATTTTATAAAAATTAA 1095 0.3863 MGSNCEEIDGEENDPCLSALLLSFSPMVYTAVLNASIELNLFEIIAKATKTTTPLGVSASEIASQLPIQHKKLPQRLDRMLSVLASHSLLTCSTLTNQDGKVQRLFQLSPSGKYFTNAEATASLALFTTFMNHPKLVQAFLNFKEIVLDCDKGLYMKVHGMPIFEGIQSDPTWNHIFNEAMANICRIEMTKILEIYSGFEGISLLIDVGGGVGQSLNIIISKYPSIKGVNFDLPQVIKQAPPYPGIEHVEGDMFESVPKGDAILLKGILHNWSDENCLKVLNNCYKALPENGKVVVVDFIMPEAIGSSEADKMVASFDNLMFLDGGSERTEKEFMNLCQISAFSSFRVVSRAFTALGVMEFYKN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2111 364 Gene3D Vaccinia Virus protein VP39 174 351 IPR029063 -
Vra5g2111 364 PANTHER O-METHYLTRANSFERASE 13 363 IPR016461 GO:0008168
Vra5g2111 364 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Vra5g2111 364 SUPERFAMILY "Winged helix" DNA-binding domain 15 118 IPR036390 -
Vra5g2111 364 Pfam O-methyltransferase domain 144 343 IPR001077 GO:0008171
Vra5g2111 364 Gene3D - 28 192 IPR036388 -
Vra5g2111 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 363 IPR016461 GO:0008168
Vra5g2111 364 Pfam Dimerisation domain 32 85 IPR012967 GO:0046983
Vra5g2111 364 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 13 363 - -
Vra5g2111 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 351 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2111 Vra-Chr5 26875966 26877322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2111 1 353 Monolignol Biosynthesis Gene Families AT5G54160 45.152 4.16e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2111 - - gmx:100784030 583.563