Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2100 ATGGCAGTAGAGTGTATAAGTGGGGCATTTCTCGCAGCTGCCTTTCAAGTGACTTTAGACAAGTTGGCTTCAAGGGACATCCAAGACTACTTCCATGGAAGTAAACTCAAGGATAAGATGCTCAAAAAGCTAGATATTGTGCTGAACTCCATCAACCAAGTGCTGGAGGATGCAGAGGAAAGGCAGTACAAAAGCTCAAACGTGATGAACTGGCTTGATCAGCTGAAAGAGGCTATATATGAAGCAGAATTGCTGTTAGATGAGGTTGCCAATGAGGCATCCAGACAGAAGCTGGAAGCTGAATTTCAGCCTGCAACTAGCAAGGTCCGAGGCTTCTTCAAGGCTTTTGTTAATCCATTTGACATGGAAATTGCTTCTAGGGTTGAAGAACTACTAGAGAACATACAATTTCTTGCAAGCCAAAAGGATATGCTAGGATTAAGAAAGGGGATTTTTTCTGGCAATGAAGTTGGAGTCAGTTGGAAACAATCCAAGCAGTTGCCAACTACATCCTTGGTGGATGAATCTAGCATTTGTGGTAGAGAGGAAGATAAAGAGGAAATCATAAAAATTTTACTTTCAGACAATGTCACATGCAATCAGGTGCCCATAATTAGTATAGTTGGAATGGGAGGGATGGGTAAGACCACCCTTAGTCAGCTTGTGTATAATGACCAAAGGGTACTAGAACAATTTGACCTTAAAGCTTGGGTCTATGTTTCACAAGATTTTGATGTTGTTGCTGTCACAAGAGCAATTCTTAAGGCACTTGGGTCCAAAGGAGCAGAAGAAAAAGACCTAAACCTACTTCAACTTGAATTGAAGCAGAGACTGATGGGAAAGAGATATTTCCTTGTTCTAGATGATGTTTGGAACGAAGACTATTCAAGTTGGGGGGTACTGCAGATCCCCTTCATTTATGGACCTTCAGGAAGTAGGATTCTTATTACCACTCGTAATGAGAAGGTAGCATTGGTCATGAACTCCTCCCATCTATATCATTTGAAGCCATTGGACAAAGAAGAATGTTGGAAGCTATTTTCTGATGTTGCTTTTCATGACAAGGATGCCACCAGATATCCATATCTTGTATCGGTTGGCAGTAAAATTGTTGACAAGTGTGGAGGATTGCCTTTAGCTTTGAAAGCATTGGGAAACATCTTGCGACTGAAATTTTCCCAGCACGAATGGGTTAAGATATTGGAGAGTGATATGTGGCACCTATCTGACAACGATGCCAACATTAACCCTGCTCTTAGATTGAGTTACCATAATCTCCCCTCCTATTTGAAGCGTTGTTTTGCTCATTGCTCCATATTTCCAAAGGGTTATGAGTTTGACAGAGATCAGCTAATCCAACTGTGGATGGCAGAAGGTTTGTTGAATTGCTTCCAAATAAACAAGAGTGAAGAAGAGTTAGGCACTGAGTTCTTCAATGATCTAGTAGCAAGGTCATTTTTCCAACAATCAAGACGCCGTGCTTCGTGCTTCACTATGCATGATCTTCTTAATGATTTAGCAAAATCTGTCTCAGGAGAATTTTGTTCACAAATAAGTGGCAGTTTGGAGAAAATTATAACCAAGAGAGCACGCCACATTTCATGGTCTAGCAAAATTAACATTGATGATAAATTCTTGGAGCATATTAGTAAGTGTAACAGATTACGTTGTTTTGTGGCATTCAAATGGGAATTTGGCAGAGGAGGCTTGATCAACACTGATAAACAACGTGTTCTGTTGTCTACATTGAAATATTTACGTGTGCTATCCTTCCATGATTGTCTTCTCACTGAATTAGTTGATGATATAGGCAATTTAAAGCTTTTGCGTTATTTAGACCTTTCGTACACTAAGATTAAAAGATTGCCTGACTCCATTTGTAGGCTGCATAATTTGCAGACGCTGCTACTATTATGGTGCTATCATTTGGATGAGCTTCCCATAGATTTGCACAAACTTGTCAACTTGCGTCATCTTGATTTGCGTATGAGCGGGATAAACAAGATGCCAAACCACATAGGAAGGCTGAAACATCTTCGCACACTGACTAGTTTTTTTATCAGGAAGCATGATGTTAAGGAATTGGGAAATCTCAGCAATCTTCAAGGAACACTTTCAATTTTCCAGTTGGAAAATGTCACCGATCCTAAGGATGCCATGGAAGCTAATCTGAAAGGTAAAAAGCATTTAGATGGATTAGTGTTGAATTGGGGTAACAAATTTGGAAGGTGCAATGAAAATGAGGACTCAATAATGGAAAGACAGGTGTTGGAGGCTCTTCAACCAAATGGGAACTTGAAAAAGCTTTCTGTTTTACGTTATGATGGAACCAGCTTTCCAAGATGGTTTGGGGGATCTCATTTGCCCAATTTAGTGTCCATTGCACTGACTGAAAGCAAATTCTGCTTTGTCTTGCCACCATTTGGGCAGCTTCCCTCTCTGAAGGAGCTTTCCATATCATGCTTTTATGGAATAGAGATCATTGGTCCTGAGTTCTGTGGTAATGATTCCTCAAATATTCCTTTCAGATCTCTTGAAATATTGAAATTTGAGGAAATGAGTGCATGGAAAGAATGGTGCAGTTTTGAAGGTCACATTGAAGAAGGCCAAGGTTTGTCTTGTCTTAAAGAGCTTTCTGTGAGGCGTTGTCCATGGTTGAGAAGGGCCCTTCCTCAACACCTTCCTTCTCTGCAGAAATTGGAAATTTGTGAATGCCAAAACTTGGAGGATTCAGTTCCCAAGGCTGTAAGTATTCATGAGGTGAAGTTCCGTTTGTGTGAAAAACTTTTCCTGAAAGATTTGCCATCCAGCTTGAAAAAGGCCACAATTCATGGAACTTGCATTATTGAGGCCTGCCTCCACCAAATTCTTGTCAACAATCCCTTCCTTGAAGAGTTGAAAATCCGCAACTTTCATGGTCCAAATAAAAAATGGTCCTCTTTGGATTTGCACAGACAAGATTCTCTAGTCACTCTCTCTATAACAAGCTGGTACTCTTCCTCTTTGCCCTTTGCACTACACTTGTTTTCCAAGCTTCATTCTGTACTTTTTCATGATTGTCCATATCTTGAGTCATTTCCCGAGGGGGGTTTGCCTTCAAGCCTACGCAAACTCGAAATTGAGGATTGTCCCAAGCTGGTTGCATCTAGGGAGAAGTGGGGATTGTTCAAACTCCATTCTCTCAGAGTTAAGAGTTAG 3198 0.4059 MAVECISGAFLAAAFQVTLDKLASRDIQDYFHGSKLKDKMLKKLDIVLNSINQVLEDAEERQYKSSNVMNWLDQLKEAIYEAELLLDEVANEASRQKLEAEFQPATSKVRGFFKAFVNPFDMEIASRVEELLENIQFLASQKDMLGLRKGIFSGNEVGVSWKQSKQLPTTSLVDESSICGREEDKEEIIKILLSDNVTCNQVPIISIVGMGGMGKTTLSQLVYNDQRVLEQFDLKAWVYVSQDFDVVAVTRAILKALGSKGAEEKDLNLLQLELKQRLMGKRYFLVLDDVWNEDYSSWGVLQIPFIYGPSGSRILITTRNEKVALVMNSSHLYHLKPLDKEECWKLFSDVAFHDKDATRYPYLVSVGSKIVDKCGGLPLALKALGNILRLKFSQHEWVKILESDMWHLSDNDANINPALRLSYHNLPSYLKRCFAHCSIFPKGYEFDRDQLIQLWMAEGLLNCFQINKSEEELGTEFFNDLVARSFFQQSRRRASCFTMHDLLNDLAKSVSGEFCSQISGSLEKIITKRARHISWSSKINIDDKFLEHISKCNRLRCFVAFKWEFGRGGLINTDKQRVLLSTLKYLRVLSFHDCLLTELVDDIGNLKLLRYLDLSYTKIKRLPDSICRLHNLQTLLLLWCYHLDELPIDLHKLVNLRHLDLRMSGINKMPNHIGRLKHLRTLTSFFIRKHDVKELGNLSNLQGTLSIFQLENVTDPKDAMEANLKGKKHLDGLVLNWGNKFGRCNENEDSIMERQVLEALQPNGNLKKLSVLRYDGTSFPRWFGGSHLPNLVSIALTESKFCFVLPPFGQLPSLKELSISCFYGIEIIGPEFCGNDSSNIPFRSLEILKFEEMSAWKEWCSFEGHIEEGQGLSCLKELSVRRCPWLRRALPQHLPSLQKLEICECQNLEDSVPKAVSIHEVKFRLCEKLFLKDLPSSLKKATIHGTCIIEACLHQILVNNPFLEELKIRNFHGPNKKWSSLDLHRQDSLVTLSITSWYSSSLPFALHLFSKLHSVLFHDCPYLESFPEGGLPSSLRKLEIEDCPKLVASREKWGLFKLHSLRVKS* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2100 1065 Coils Coil 41 61 - -
Vra5g2100 1065 SUPERFAMILY L domain-like 498 910 - -
Vra5g2100 1065 PRINTS Disease resistance protein signature 204 219 - -
Vra5g2100 1065 PRINTS Disease resistance protein signature 277 291 - -
Vra5g2100 1065 PRINTS Disease resistance protein signature 374 388 - -
Vra5g2100 1065 PRINTS Disease resistance protein signature 892 908 - -
Vra5g2100 1065 Gene3D Ribonuclease Inhibitor 570 940 IPR032675 -
Vra5g2100 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 437 IPR027417 -
Vra5g2100 1065 Pfam NB-ARC domain 181 433 IPR002182 GO:0043531
Vra5g2100 1065 Coils Coil 72 92 - -
Vra5g2100 1065 PANTHER OS05G0414200 PROTEIN 23 913 - -
Vra5g2100 1065 PANTHER DISEASE RESISTANCE PROTEIN RP 23 913 IPR044974 GO:0006952
Vra5g2100 1065 Gene3D - 160 332 IPR027417 -
Vra5g2100 1065 Gene3D - 429 509 IPR036388 -
Vra5g2100 1065 Pfam Rx N-terminal domain 16 102 IPR041118 -
Vra5g2100 1065 Gene3D - 14 127 - -
Vra5g2100 1065 Gene3D - 337 427 IPR042197 -
Vra5g2100 1065 SUPERFAMILY RNI-like 844 1048 - -
Vra5g2100 1065 SMART LRR_typ_2 653 676 IPR003591 -
Vra5g2100 1065 SMART LRR_typ_2 606 629 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2100 Vra-Chr5 26792497 26797308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2100 205 510 WRKY Transcription Factor Family AT5G45050 25.915 1.49e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2100 - - vra:106759943 2120.51