Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2099 ATGGAGAACCAACAAATTCTCATGCTAATCATTTACACTACTTTCTTTTGTTTCATGCCCACTTCCTCTACTATCACTCCAAATCAGTCCTTAAAATATCATGAGACCCTTGTTTCTTCTGCAGGAACCTTTGAAGCTGGATTTTTTGACTTTGGAAACTCAAGAAGACAATATTTTGGTATATGGTACAAGGGCATATCACCTAGGATTATTGTGTGGGTTGCCAACAGGAATGTCCCAGCACAAAACTCAACAGCACTTCTGAAACTTACTCATCAAGGACATCTTGTCATTCTTGATGGCTCCGGAGGAAGAGTTTGGTCCTCCAACTCATCAAAAATTGCAGTGAAACCAGTTATGCAGCTTTTAGATTCAGGAAACCTTGTTGTCAAAGATGGAGAGAGCTCAGAGAACTTCTTGTGGGAAAGCTTTGATTATCCTGGAGACACTTTCCTTGCAGGAATGAAACTCAAAAGTGATTTTGTTACTGGTCCNTATCANTATCTCACGTCNTGGAGGGACAANGATGATCCAGCTGAAGGTGANTTTTCTTATNNGATCGATACAAAGGGCTTTCCTCANCAAGTTACTACANACNNAACTACAATTTTNTACAGCACAGGGCCTTGGAATGGCTATCTTTTCAGTGGNGNTTCTTGGGANAGAATGCACAGATTCTTGAATTTCTCTTTNGAGTTCACTNACAAAGGGGTTTCTTATGGATATGAAACNTTAAACNGTTCANNNCTTAGNANAACAANGCTNANGCTCAATNNAAGAGGGGNTNCAGAGCGTTTTCTATGGTCAAACCAAAGACAAAGTTGGGATATTGTAAACAGTCATCCAACAGATCAGTGTGAATATTTTGCCACTTGTGGTGTCAACTCTATCTGTAATGTTAATAATCTTCCAATATGTGAATGCTTGCAAGGTTTCACACCAAAGTTTCAAGCAAAGTGGGATTCTCATGATTGGTCTGGNGGTTGTGTCAGAANAACAAAGTTAAGTTGTGATNANGGAGATTGGTTTAAGGAGTACACAGGAATAAAACTGCCAGAAACGTCTTCTTCCTGGTTTGACAGGAGCTTGAGCCTTCAGGAATGTGAGACATTGTGTTTGAGAAATTGCTCTTGTACTGCATATGCAAATTCGGATATTAGAGATGGTGGGAGTGGTTGTTTGCTTTGGTTCCATGACATTGTGGACATGAGAACTCACACTGATCAAGGGCAAGAAATTCATATACGACTGCCATTTTCTGAACGTGGTAATTTCATTTCCATTTCCATTTTATGCCTTTTTCTACTTGTGATTTTTCACTATTTTCATTCCTCAGATCCAAGAAGGAGTAAGAGGTACCTAAATCCGAAGAGACTTGCAGGGATTGTAGTAGGACTCGTTACATTCATAGTTGGACTAACAATTCTTGTGCGGGCGACTTCAAAACGTATAAAAGGGATGACGCAACCGAAGCCAGTGAAAAAAGCTATTCCCTGGAAACACATGATGGAGAAGGAAAACAACAGCTTACCGATAATGTTTGATTTTTCAACCATTGATATTGCCACAAATCATTTTTCTAACACAAGCAAGTTAGGAGAAGGTGGTTTTGGAACAGTACACAAGGGAACGTTGATAGATGGACAAGAGATTGCAGTGAAGAGACTTTCAAAAACTTCGAGACAGGGAACCGATGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAGAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGTTTGGATTACTTTATTTTTGATACAATTCGAGGCAAATTACTAGATTGGGATAAGCGGTTGAAAATTATCGATGGAATTGCTAGGGGTCTTATGTATCTTCATCAAGATTCTAGACTTAGGATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGATAATATGATTCCAAAGATATCAGATTTTGGATTAGCAAGAATATTTGGAGTAGATCAAGCTGAAGAAAATACAAACAGAGTGATGGGAACGCATGGCTATATGCCTCCAGAATATGTAGTGCATGGTTCTTTCTCAACCAAATCTGATGTTTTCAGTTTTGGCGTAATTGTTATTGAGATAATTAGTGGAAGGAAGAATCGTGGATTTCATGACCCTCACCATCATCTTCTCAACCTTCTTGGCCATGCGTGGAGATTATGGAATGAAGAAAGGCCACTGGAGTTAATGGATGAGATGTTAGATGATGGTGGAGACTTATCTTTAGAAATACTGCGGTATATTCATGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAATATGTCCTCTATTGTTCTAATGTTAAATGGTGAGAAGTTGCTACCGAAACCAAGCCAGCCTGGATTCTATATAGGAAAAGATAATATTGCTGACACTGAATCTTCAAAGCAATATGAAAGGTGTTCAATAAATGAAGTTTCAATTTCATCCTTAGATGCGCGATAG 2538 0.3806 MENQQILMLIIYTTFFCFMPTSSTITPNQSLKYHETLVSSAGTFEAGFFDFGNSRRQYFGIWYKGISPRIIVWVANRNVPAQNSTALLKLTHQGHLVILDGSGGRVWSSNSSKIAVKPVMQLLDSGNLVVKDGESSENFLWESFDYPGDTFLAGMKLKSDFVTGPYXYLTSWRDXDDPAEGXFSYXIDTKGFPXQVTTXXTTIXYSTGPWNGYLFSGXSWXRMHRFLNFSXEFTXKGVSYGYETLNXSXLXXTXLXLNXRGXXERFLWSNQRQSWDIVNSHPTDQCEYFATCGVNSICNVNNLPICECLQGFTPKFQAKWDSHDWSGGCVRXTKLSCDXGDWFKEYTGIKLPETSSSWFDRSLSLQECETLCLRNCSCTAYANSDIRDGGSGCLLWFHDIVDMRTHTDQGQEIHIRLPFSERGNFISISILCLFLLVIFHYFHSSDPRRSKRYLNPKRLAGIVVGLVTFIVGLTILVRATSKRIKGMTQPKPVKKAIPWKHMMEKENNSLPIMFDFSTIDIATNHFSNTSKLGEGGFGTVHKGTLIDGQEIAVKRLSKTSRQGTDEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTIRGKLLDWDKRLKIIDGIARGLMYLHQDSRLRIIHRDIKTSNILLDDNMIPKISDFGLARIFGVDQAEENTNRVMGTHGYMPPEYVVHGSFSTKSDVFSFGVIVIEIISGRKNRGFHDPHHHLLNLLGHAWRLWNEERPLELMDEMLDDGGDLSLEILRYIHVGLLCVQQNPENRPNMSSIVLMLNGEKLLPKPSQPGFYIGKDNIADTESSKQYERCSINEVSISSLDAR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2099 845 Pfam PAN-like domain 337 403 IPR003609 -
Vra5g2099 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 178 IPR036426 -
Vra5g2099 845 CDD B_lectin 28 147 IPR001480 -
Vra5g2099 845 Gene3D - 17 144 IPR036426 -
Vra5g2099 845 Gene3D Phosphorylase Kinase; domain 1 500 601 - -
Vra5g2099 845 Pfam D-mannose binding lectin 71 173 IPR001480 -
Vra5g2099 845 SMART ntp_6 338 417 IPR003609 -
Vra5g2099 845 CDD STKc_IRAK 532 801 - -
Vra5g2099 845 CDD PAN_AP_plant 333 418 - -
Vra5g2099 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Vra5g2099 845 ProSiteProfiles Protein kinase domain profile. 526 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2099 845 Pfam Domain of unknown function (DUF3403) 805 845 IPR021820 GO:0004674
Vra5g2099 845 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524
Vra5g2099 845 PIRSF SRK 3 845 IPR024171 GO:0004674
Vra5g2099 845 SMART serkin_6 526 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2099 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 820 - -
Vra5g2099 845 Gene3D Transferase(Phosphotransferase) domain 1 602 806 - -
Vra5g2099 845 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Vra5g2099 845 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
Vra5g2099 845 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 820 - -
Vra5g2099 845 SUPERFAMILY Protein kinase-like (PK-like) 506 799 IPR011009 -
Vra5g2099 845 Pfam S-locus glycoprotein domain 205 316 IPR000858 GO:0048544
Vra5g2099 845 Pfam Protein tyrosine and serine/threonine kinase 529 797 IPR001245 GO:0004672|GO:0006468
Vra5g2099 845 SMART blect_4 28 147 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2099 Vra-Chr5 26772431 26776305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2099 466 813 Receptor kinase-like Gene Family AT4G23230 54.545 6.37e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g2099 PK_Tyr_Ser-Thr 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2099 - - gmx:100819820 1186.4