Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2098 ATGGAGAGCCAACAAATTCTCATGCTAATCTTCTTTTGTTTCATATTCACTTCCTCTCATCAATATACACTTATCACCCCAAATCAGACCTTACAATATCATGAGACACTTGTTTCTTCTGCAGGAACCTTTGAAGCAGGATTTTTTGACTTCGGAAACTCAAGAAGACAATATTTTGGTATATGGTACAAGGGCATATCACCTAGGATTATTGTGTGGGTTGCCAACAGGAATGTCCCAGCACAAAACTCAACAGCACTTCTGAAACTTACTCATCAAGGAAATCTTGTCATTCTTGATGGCTCCGGAGGAAGAGTGTGGTTCTCCAACTCATCAAAAATTGCAGTGAAACCAGTTATGCAGCTTTTAGAATCAGGAAACCTTGTTGTAAAAGATGGAGAGAGCTCAGAGAACTTCTTGTGGGAAAGCTTTGATTATCCTGGAGACACTTTCCTTGAAGGAATGAAACTCAAAAGTGATTTTGTTACTGGTCCATATCAGTATCTCACGTCTTGGAGGGACATTGATGATCCAGCTGAAGGTGAGTTTTCTTTTATGATCGATACAAAGGGCTATCCTCAACAAGTTACTACAAACGGAACTACAATTTTTTACAGCACAGGGCCTTGGAATGGCTATCTTTTCAGTGGTGTTTCTTGGGACAGAACGTTCAGTTCATTGAATTTCTCTTTGGAGTTCACTAACAAAGGGGTTTCTTATGGATATGAAACGTTAAACAGTTCAGAACTTAGTATAACAAGGCTCAAACTCAATCCAAGCGGGGCTACAGAGCGTTTTCTATGGTCAAACAAAAGACAAAGTTGGGATGTTGTAAGCAGTTATCCAATAGATAAGTGTGAATATTTTTCCACTTGTGATGTCAACTCTATCTGCAATATTAATAATCTTCCAAAATGTGAATGCTTGCAAGGATTCACACCAAAGTTTCAAGCAAAGTGGGATTCCCATGAATGGTCTGGTGGTTGTGTCAGAAGAACAAAGTTAAGTTGTGATAATGGAGATTGGTTTAAGAAGTACACAGGAATAAAGCTTCCAGAAACGTCTTCTTCCTGGTTTAACAGGAGCTTGAGCCTTAAGGAATGTAAGACACTGTGTTTGAGAAATTGCTCTTGTACTGCGTATGCAAATTCAGATATTAGAGATGGTGGGAGTGGTTGTTTGCTTTGGTTCCATGACATTGTGGACATGAGAACTCACACTAATCAAGGGCAAGAAATTCATATACGACTGTCATTCTCTGAACATCCAAGAAGGAATAAGAAGAGACTTGCGAGGATTGTGGTAGGACTTGTTACATTCATAGTTGGACTAACAATTCTTGTGTGGGCGACTTCAAAACGTATGAAAGGGATGAAGCATCCCAAGCCAGTGAAAAAATCTATTCCCTCGAAGCACATGATGGAGAAGGAAAACAACAACTTACCGACAATGTTTGATTTTTCAACCATTGATATTGCCACAAATCATTTTTCTNACACAAACAAGTTAGGAGAAGGTGGTTTTGGAACAGTACACCAGGGAACGTTGATAGATGGACAAGAGATTGCAGTGAAGAGACTTTCAAAAACTTCGAGACAGGGAACTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAGAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGTTTGGATTACTTTATTTTTGATACAATGCGAGGCAAATTACTAGGTTGGGCTAAGCGGTTGAAAATTATCGAGGGAATTGCTCGAGGTCTTATGTATCTTCATCAAGATTCCAGACTTAGAATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGATAATATGATTCCAAAGATATCCGATTTTGGATTAGCAAGAATATTTGGAGTAGATCAAGCTGAAGAAAATACAAACAGAGTGATGGGAACGCATGGCTATATGCCTCCAGAATATGTAGTGCATGGTTCTTTCTCAACCAAATCTGATGTTTTCAGTTTTGGCGTAATTGTTATTGAGATAATTAGTGGAAGGAAGAATCGTGGATTTCATGACCCTCACCATCATCTTCTCAACCTTCTTGGCCATGCGTGGAGATTATGGAATGAAGAAAGGCCACTGGAGTTAATGGATGAGATATTAGATGATGGTGGAGACTTATCTTTAGAAATATTGAGGTGCATTCATGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAATATGTCATCTGTCGTTTTGATGTTAAATGGTGAGAAGTTGCTACCAAAACCAAGTGAACCTGGATTCTATATAGGAAAAGATAATATAGCTGACACTGAATCTTCAAAGCAATATGAAAAGTGTTCAGTAAATGAAGTTTCAATTTCATCGTTAGAGGTGCGATAG 2451 0.3839 MESQQILMLIFFCFIFTSSHQYTLITPNQTLQYHETLVSSAGTFEAGFFDFGNSRRQYFGIWYKGISPRIIVWVANRNVPAQNSTALLKLTHQGNLVILDGSGGRVWFSNSSKIAVKPVMQLLESGNLVVKDGESSENFLWESFDYPGDTFLEGMKLKSDFVTGPYQYLTSWRDIDDPAEGEFSFMIDTKGYPQQVTTNGTTIFYSTGPWNGYLFSGVSWDRTFSSLNFSLEFTNKGVSYGYETLNSSELSITRLKLNPSGATERFLWSNKRQSWDVVSSYPIDKCEYFSTCDVNSICNINNLPKCECLQGFTPKFQAKWDSHEWSGGCVRRTKLSCDNGDWFKKYTGIKLPETSSSWFNRSLSLKECKTLCLRNCSCTAYANSDIRDGGSGCLLWFHDIVDMRTHTNQGQEIHIRLSFSEHPRRNKKRLARIVVGLVTFIVGLTILVWATSKRMKGMKHPKPVKKSIPSKHMMEKENNNLPTMFDFSTIDIATNHFSXTNKLGEGGFGTVHQGTLIDGQEIAVKRLSKTSRQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTMRGKLLGWAKRLKIIEGIARGLMYLHQDSRLRIIHRDIKTSNILLDDNMIPKISDFGLARIFGVDQAEENTNRVMGTHGYMPPEYVVHGSFSTKSDVFSFGVIVIEIISGRKNRGFHDPHHHLLNLLGHAWRLWNEERPLELMDEILDDGGDLSLEILRCIHVGLLCVQQNPENRPNMSSVVLMLNGEKLLPKPSEPGFYIGKDNIADTESSKQYEKCSVNEVSISSLEVR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2098 816 ProSiteProfiles Protein kinase domain profile. 497 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2098 816 Gene3D - 18 144 IPR036426 -
Vra5g2098 816 SMART blect_4 28 147 IPR001480 -
Vra5g2098 816 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Vra5g2098 816 SMART ntp_6 338 417 IPR003609 -
Vra5g2098 816 SUPERFAMILY Protein kinase-like (PK-like) 484 781 IPR011009 -
Vra5g2098 816 CDD B_lectin 28 147 IPR001480 -
Vra5g2098 816 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
Vra5g2098 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 212 IPR036426 -
Vra5g2098 816 Pfam S-locus glycoprotein domain 205 316 IPR000858 GO:0048544
Vra5g2098 816 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 794 - -
Vra5g2098 816 Gene3D Hepatocyte Growth Factor 334 419 - -
Vra5g2098 816 PIRSF SRK 2 816 IPR024171 GO:0004674
Vra5g2098 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 794 - -
Vra5g2098 816 CDD PAN_AP_plant 333 418 - -
Vra5g2098 816 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Vra5g2098 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Vra5g2098 816 Gene3D Phosphorylase Kinase; domain 1 470 572 - -
Vra5g2098 816 Pfam PAN-like domain 337 403 IPR003609 -
Vra5g2098 816 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2098 816 Gene3D Transferase(Phosphotransferase) domain 1 573 777 - -
Vra5g2098 816 Pfam Protein tyrosine and serine/threonine kinase 499 767 IPR001245 GO:0004672|GO:0006468
Vra5g2098 816 CDD STKc_IRAK 503 772 - -
Vra5g2098 816 Pfam D-mannose binding lectin 71 173 IPR001480 -
Vra5g2098 816 Pfam Domain of unknown function (DUF3403) 776 815 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2098 Vra-Chr5 26754813 26758593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2098 437 784 Receptor kinase-like Gene Family AT4G23230 54.261 8.62e-121 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g2098 PK_Tyr_Ser-Thr 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2098 - - gmx:100819820 1212.98