Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2097 ATGGAGAGCCTACGAATTCTCATGCTAATCATTTACATTACTTTATTTTTTTCATTGCCCACTTCCTCTACTATCACCCCAAATCATTCCTTACAATATCATGAGACCCTTGTTTCTTCTGCAGGAACTTTTGAAGCTGGATTTTTTGACTTTGGAAACTCAAGAAGACAATATTTTGGTATATGGTACAAGGACATATCACCTAGGATTATTGTGTGGGTTGCCAACAGGAATGTCCCAGCACAAAACTCAACAGCACTTCTGAAACTTACTCATCAAGGAAATCTTGTCATTCTTGATGGCTCCGGAGGAAGAGTGTGGTCCTCCAACTCATCAAAAATTGCAGTGAAACCAGTTTTGCAACTTTTAGATTCAGGAAACCTTGTTGTCAAAGATGGAGAGAGCTCAGAGAACTTCTTGTGGGAAAGCTTTGATTATCCTGGAGACACTTTCCTTGCAGGCATGAAACTGAAAAGTGATTTTGTTACTGGTCCATATCAATATCTCACGTCTTGGAGGGACAAAGATGATCCAGCTGAAGGTGATTTTTCTTATAAGATCGATACAAAGGGCTTTCCTCAACAAGTTACTACAAACGGAACTACAATTTTTTACAGCACAGGGCCTTGGAATGGCTATCTTTTCAGTGGTGCTTCTTGGGAAAGAATGCACAGATTCTTGAATTTCTCTTTGGAGTTCACTGACAAAGGGGTTTCTTATGGATATGAAACATTAAACGGTTCAAAACTTAGCATAACAAGGCTGATGCTCAATCCAAGAGGGGATGCAGAGCGTTTTCTATGGTCAAACCAAAGACAAAGTTGGGATATTGTGAAAAGTCATCCAATAGATCAGTGTGAATATTTTGCCACTTGTGGTGTCAACTCTATGTGCAATGTTAATTATCTTCCAATATGTGAATGCTTGCAAGGTTTCACACCAAAGTTTCAAGCAAAGTGGGATTCTCATGATTGGTCTGGTGGTTGTGTCAGAAAAACAAAGTTAAGTTGTGATTATGGAGATTGGTTTAAGGAGTACACAGGAATAAAGCTGCCAGAAACGTCTTCTTCCTGGTTTGACAGGAGCTTGAGCCTTAAGGAATGTGAGACATTGTGTTTGAGAAATTGCTCTTGTACTGCATATGCAAATTCGGATATTAGAGATGGTGGGAGTGGTTGTTTGCTTTGGTTCCATGACATTGTGGACATGAGAATTCACACTGATCGAGGGCAAGATATTCATATACGACTGCCATTTTCTGAACGTGATCCAAGAAGGAGTAAGAGGTACCTAAATCCGAAGAGACTTGCAGGGATTGTAGTAGGACTCGTTACATTCATAGTTGGACTAACAATTCTTGTGCGGGCGACTTCAAAACGTATAAAAGGGATGACGCAACCGAAGCCAGTGAAAAAAGCTATTCCCTGGAAACACATGATGGAGAAGGAAAACAACAGCTTACCGATAATGTTTGATTTTTCAACCATTGATATTGCCACAAATCATTTTTCTAACACAAGCAAGTTAGGAGAAGGTGGTTTTGGAACAGTACACAAGGGAACGTTGATAGATGGACAAGAGATTGCAGTGAAGAGACTTTCAAAAACTTCGAGACAGGGAACCGATGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAGAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGTTTGGATTACTTTATTTTTGATACAATTCGAGGCAAATTACTAGATTGGGATAAGCGGTTGAAAATTATCGATGGAATTGCTAGGGGTCTTATGTATCTTCATCAAGATTCTAGACTTAGGATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGATAATATGATTCCAAAGATATCAGATTTTGGATTAGCAAGAATATTTGGAGTAGATCAAGCTGAAGAAAATACAAACAGAGTGATGGGAACGCATGGCTATATGCCTCCAGAATATGCAGTGCATGGTTCTTTCTCAACCAAATCTGATGTTTTCAGTTTTGGTGTAATTGTTATTGAGATAATTAGTGGAAGGAAGAATCGTGGATTTCGTGACCCTCACCATCATCTTCTCAACCTTCTTGGCCATGCGTGGAGATTATGGAATGAAGAAAGGCCACTGGAGTTAATAGATGACATATTAGATGATGGTGGAGACTTATCTTTAGAAATACTGCGGTGTATTCATGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAATATGTCCTCTATTGTTCTAATGTTAAATGGTGAGAAGTTGCTACCGAAACCAAGCCCACCTGGATTCTATATGGGAAAAGATAATATGGCCGACACTGGATGTTCAAAGCAATATGAAATGTGTTCGGTAAATGAAGTTTCAATGTCATCCTTTGAGTCCCGATAG 2469 0.3896 MESLRILMLIIYITLFFSLPTSSTITPNHSLQYHETLVSSAGTFEAGFFDFGNSRRQYFGIWYKDISPRIIVWVANRNVPAQNSTALLKLTHQGNLVILDGSGGRVWSSNSSKIAVKPVLQLLDSGNLVVKDGESSENFLWESFDYPGDTFLAGMKLKSDFVTGPYQYLTSWRDKDDPAEGDFSYKIDTKGFPQQVTTNGTTIFYSTGPWNGYLFSGASWERMHRFLNFSLEFTDKGVSYGYETLNGSKLSITRLMLNPRGDAERFLWSNQRQSWDIVKSHPIDQCEYFATCGVNSMCNVNYLPICECLQGFTPKFQAKWDSHDWSGGCVRKTKLSCDYGDWFKEYTGIKLPETSSSWFDRSLSLKECETLCLRNCSCTAYANSDIRDGGSGCLLWFHDIVDMRIHTDRGQDIHIRLPFSERDPRRSKRYLNPKRLAGIVVGLVTFIVGLTILVRATSKRIKGMTQPKPVKKAIPWKHMMEKENNSLPIMFDFSTIDIATNHFSNTSKLGEGGFGTVHKGTLIDGQEIAVKRLSKTSRQGTDEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTIRGKLLDWDKRLKIIDGIARGLMYLHQDSRLRIIHRDIKTSNILLDDNMIPKISDFGLARIFGVDQAEENTNRVMGTHGYMPPEYAVHGSFSTKSDVFSFGVIVIEIISGRKNRGFRDPHHHLLNLLGHAWRLWNEERPLELIDDILDDGGDLSLEILRCIHVGLLCVQQNPENRPNMSSIVLMLNGEKLLPKPSPPGFYMGKDNMADTGCSKQYEMCSVNEVSMSSFESR* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2097 822 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 796 - -
Vra5g2097 822 SUPERFAMILY Protein kinase-like (PK-like) 483 776 IPR011009 -
Vra5g2097 822 Gene3D Transferase(Phosphotransferase) domain 1 579 782 - -
Vra5g2097 822 CDD STKc_IRAK 509 778 - -
Vra5g2097 822 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Vra5g2097 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Vra5g2097 822 SMART ntp_6 338 417 IPR003609 -
Vra5g2097 822 Pfam Protein tyrosine and serine/threonine kinase 506 773 IPR001245 GO:0004672|GO:0006468
Vra5g2097 822 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Vra5g2097 822 CDD PAN_AP_plant 333 418 - -
Vra5g2097 822 Pfam PAN-like domain 337 403 IPR003609 -
Vra5g2097 822 SMART serkin_6 503 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2097 822 SMART blect_4 28 147 IPR001480 -
Vra5g2097 822 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
Vra5g2097 822 Gene3D - 16 144 IPR036426 -
Vra5g2097 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 178 IPR036426 -
Vra5g2097 822 ProSiteProfiles Protein kinase domain profile. 503 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2097 822 Gene3D Phosphorylase Kinase; domain 1 477 578 - -
Vra5g2097 822 Pfam D-mannose binding lectin 71 173 IPR001480 -
Vra5g2097 822 CDD B_lectin 35 147 IPR001480 -
Vra5g2097 822 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 796 - -
Vra5g2097 822 Pfam S-locus glycoprotein domain 205 316 IPR000858 GO:0048544
Vra5g2097 822 PIRSF SRK 1 822 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2097 Vra-Chr5 26744409 26753206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2097 443 790 Receptor kinase-like Gene Family AT4G23230 55.114 9.53e-121 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g2097 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2097 - - gmx:100819820 1221.45