Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2095 ATGGAAATCGTGGAAAAGAGAAAATTTTCTAAACTGTTGTCAGAGCTGATAGTTTTGGCCGATGAGGTTGCTTCTCTAGCTAAGAACTCTGAAATTGAGGTACATATTTTTTCTGAGTTTGCCATGTTGGTTGAGAAATTCTCACCAATCTTCAATGACTTGAGAGACAAAAACACAGTCTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAATGAGCTGAGGCGTGCCAAAGCTTTGACAAAAAGCTCGAATTTAAGGCAACCCATCAAGCAAATTGAGGACATAACACATGACATAGGTCGATCTTTTGGCCTTCTGCTCGTAGCCAGCCTAGAAATTTCCGTGGATTTCAGAGAAAAGATTGGTACATTGCAAAGACAGTTGATGAATGTGAGATTTGATGGCACTTTAAGTGTAGCTTCAAGTCCAAAATCAGAGGTTTCCGGCAGTGAAGTGAAGCTGACTGCAGAAATAGAAGAGGAAATAGTTAATGTTTCTATTGCTGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTTCACTTTTGAGACTGAAGGAGTTCATAAATAGTGAAGGATTTGATACTGGTTTGATCAACGAGGAAGCAACTCTTTCCATTCTTTTCAACCGTCTAGGTTCATGTAAGGCAGACAACAGGTTGGCAATCATGCGGTTGCTAAGAAGTATTGCTTCAGGAAATGATGAGAAAAAGGAGAAGATGGTAGATATTGATTTCTTATCAGCAGTGGTGAAGTCACTCACAAGAGATTCAGAGGAGAGGAAAGAAGCAGTAGGGCTGTTGCTAGAGCTCTCCGACATTCAGGCCGTTCGCCGGCGAATAGGAAGAATTCAAGGCTGCATTGTTATGTTAGTTGCTATCCTTAATGGGGATGACCCTGATGCCTCAAATGATGCTGCAAAGTTATTGGATATATTGTCTAGTAATTCTCAAAATGCACTTCATATGGCCGAGGCTGGCTACTTTAGGCCACTAGTGCAGTATTTGAAAGAAGGATCTGACATGAACAAGATCCTAATGGCAACAGCACTATCAAGGTTGGAACTCCCTGATCACAGTAAGCTTTCCCTTGGAGAAGATGGGGCAATTGAGCCCCTTGTCAACATGTTCAGCACAGGGAAACTCGAGTCCAAGTTATCAGCTCTAAATGCGCTGCAAAATCTGTCAACCGTGGCAGAAAATGTGCAGCGTTTGATCAGATCAGGAATTTCAGGATCTCTGCTACAACTTCTTTTCTCAGTTACATCTGTGCTCATGACATTGCGTGAGCCTGCATCAGCAATTCTTGCAAGAATTGCTCAGTCTGAATCCATCCTTGTGAATGAAGATGTGGCTCAGCAAATGCTTTCACTTTTGAATCTTTCCAGCCCCATTATTCAGGGCCATTTGTTAGAAGCTCTAAATAACATAGCCTCCCACCCTGGTGCATCCAGAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAGCTGCTCTTACCCTTTCTGAAGGAAAACACCACCAAAGTCAGGAGCAAGGTCTTGCATCTTTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTCACCTCTTAAACATAGTCAATATAGTCTCAACATCAACATCAGACAGTGAAAGGGCTGCAGCTGTTGGCATACTGAGTAATCTTCCTGCTAGTAACAAAAAGGTGACTGATATACTACAGAGGGCAAATTTGCTGCCAATTTTAATATCCATCATGTATACTATCTCAGGAAGTAACTCATCCACAACAAATAGCTTAGCAGAGAGTATTGCCAGTGTTATCATTCGCTTCACCAATTCCTCTGACAAAAAACTACAACTTCTCTCAGCCGAACAAGGGGTGATCCCTTTGCTTGTGAAACTGCTCTCAAGCGGTTCACCAATCACAAAAGCAAGGGCTGCAGTCTCACTGGCTCAACTATCTCAGAATTCTCTGTCTCTTAGAAAGTCTAGAAAGTCAAGGTGGTTGTGTGTTCCTCCCTCAGTGAATGCATTTTGTGAAGTTCATGATGGATTTTGCTTTGTAAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTCATCCAACTGTTGGAAGATACTGAGAGAGAAGCAGTTGAAGCTGCTTTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTGCATTGCCAAGTTATCTGGTGTGCAAGCCATCATAAAAAGTCTTGAAGTTGGCGATGCAAAGGTTCAAGAAAAAGCAATATGGATGCTGGAGAGAATATTCAAAGTTGCAGAACATAGAGTTAAGTATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTAGCTGAGCTTGAGCTCTTGCAATCTCAGTCAAGTTACTTTTAA 2493 0.4156 MEIVEKRKFSKLLSELIVLADEVASLAKNSEIEVHIFSEFAMLVEKFSPIFNDLRDKNTVLDKPPIRKSLESLENELRRAKALTKSSNLRQPIKQIEDITHDIGRSFGLLLVASLEISVDFREKIGTLQRQLMNVRFDGTLSVASSPKSEVSGSEVKLTAEIEEEIVNVSIADVVLQLKNGNDEEFAVSLLRLKEFINSEGFDTGLINEEATLSILFNRLGSCKADNRLAIMRLLRSIASGNDEKKEKMVDIDFLSAVVKSLTRDSEERKEAVGLLLELSDIQAVRRRIGRIQGCIVMLVAILNGDDPDASNDAAKLLDILSSNSQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELPDHSKLSLGEDGAIEPLVNMFSTGKLESKLSALNALQNLSTVAENVQRLIRSGISGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASRVRSKMKEKGALQLLLPFLKENTTKVRSKVLHLLYTLSKDLTDELTEHLDETHLLNIVNIVSTSTSDSERAAAVGILSNLPASNKKVTDILQRANLLPILISIMYTISGSNSSTTNSLAESIASVIIRFTNSSDKKLQLLSAEQGVIPLLVKLLSSGSPITKARAAVSLAQLSQNSLSLRKSRKSRWLCVPPSVNAFCEVHDGFCFVNSTFCLVKAGAVSPLIQLLEDTEREAVEAALHALSTLLQDEIWEGGVNCIAKLSGVQAIIKSLEVGDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2095 830 Gene3D - 173 329 IPR011989 -
Vra5g2095 830 Gene3D - 331 677 IPR011989 -
Vra5g2095 830 SMART arm_5 698 738 IPR000225 GO:0005515
Vra5g2095 830 SMART arm_5 324 364 IPR000225 GO:0005515
Vra5g2095 830 SMART arm_5 365 405 IPR000225 GO:0005515
Vra5g2095 830 SMART arm_5 626 666 IPR000225 GO:0005515
Vra5g2095 830 SMART arm_5 491 531 IPR000225 GO:0005515
Vra5g2095 830 SMART arm_5 242 281 IPR000225 GO:0005515
Vra5g2095 830 SMART arm_5 742 782 IPR000225 GO:0005515
Vra5g2095 830 Coils Coil 70 90 - -
Vra5g2095 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Vra5g2095 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 830 - -
Vra5g2095 830 SUPERFAMILY ARM repeat 171 428 IPR016024 -
Vra5g2095 830 SUPERFAMILY ARM repeat 372 784 IPR016024 -
Vra5g2095 830 Gene3D - 697 828 IPR011989 -
Vra5g2095 830 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 1 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2095 Vra-Chr5 26706507 26710949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2095 215 830 U-box Gene Family AT1G76390 29.439 4.60e-49 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2095 K08332 - gmx:100791453 1352.04