Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2081 ATGATAGAGAAGGGATATAAATGGCTGCTGGGGGTTGGTCGGACAAGCATGGCATCTAGTCATCCATTCTTTGATGATATCCGGAGCAGATGCAGTGTCGATCCTCCTCAAACGGAAGAGCCAACTGAAGTTGGTGAACTTGTGAATGAGCCTCTGCAGACTGCCCTTAAACCTCATGGGACTGTTACAAGCAGTGTTCGTGAGCTGTTAGAGTGCCCTGTGTGTTTAAATGCTATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGATCGGTGCCCTACATGTAGGCACGAGCTTGGCAATATCAGATGTCTGGCACTGGAAAAGGTGGCTGCATCATTAGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATGGGCATATACCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCATTTAGACCTTATAATTGCCCATATGCTGGTTCAGAATGTTCAGTTATGGGTGATATACCTTACCTTGTGACCCATCTGAAAGATGATCATAAAGTGGACATGCACAATGGTTGTACTTTCAATCACCGTTATGTCAAAACAAATCCACAAGAAGTCGAAAATGCCACATGGATGTTAACGGTTTTCAGCTGCTTTGGTCAGTATTTCTGTCTACACTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATCGCTTTTTTGCGGTTCATGGGGGACGACAATGAGGCGAAGAACTACACGTATAGTCTGGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGCATTAGGGATAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAGCATGGCTCTATTCTTTTCTGGGGGTGACAAGAAGGAACTGAAACTACGAGTCACTGGGAGAATTTGGAAAGAGCAGTGA 963 0.4548 MIEKGYKWLLGVGRTSMASSHPFFDDIRSRCSVDPPQTEEPTEVGELVNEPLQTALKPHGTVTSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAFRPYNCPYAGSECSVMGDIPYLVTHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRSMALFFSGGDKKELKLRVTGRIWKEQ* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2081 320 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 23 320 - -
Vra5g2081 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 178 IPR013083 -
Vra5g2081 320 CDD RING-HC_SIAHs 70 108 - -
Vra5g2081 320 CDD Sina 186 314 - -
Vra5g2081 320 SUPERFAMILY RING/U-box 62 111 - -
Vra5g2081 320 Pfam Seven in absentia protein family 114 313 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vra5g2081 320 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Vra5g2081 320 SUPERFAMILY TRAF domain-like 125 317 - -
Vra5g2081 320 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 179 313 IPR008974 GO:0005515
Vra5g2081 320 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270
Vra5g2081 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 23 320 - -
Vra5g2081 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 123 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2081 Vra-Chr5 26560215 26564205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2081 46 320 C3H Transcription Factor Family AT2G41980 75.451 2.71e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2081 K04506 - gmx:100793457 607.06