Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2078 ATGTCTGTTCAACGAGAACATCATAGTACCAATGACATATCAGGTTCAGGATCAGGATCTTGTCTTTATGATCTGTTTTGTTCAGAAACACCTAATATCAATGCTCACAATCTAAGAGAACGATGGATGTCTTCTGGACCGCAGAAAAGATTAGACAATTTGATGCGTCAAGCTGGGAACAGGTATTGTGCTGATTGTGGATCATTAGAGCCAAAATGGGTGTCTACAAGCCTTGGAGTTTTTATTTGCATCAAATGCTCTGGAGTACATAGAAGCCTCGGTGTCCATATATCCAAGGTTCTGTCCCTAAAGCTAGATGAATGGACAGATGAGCAAGTTGATGAATTGGTGAAATTGGGTGGAAATACAGTAGTGAACAAGAAGTATGAAGCTTACCTGCCAAGTAACATAAGAAAACCAAAACCTAATTCTTCCATTGAAGAACGCTCTGATTTCATTAGGAGAAAATATGAGTTTCTGCAGTTTTTGGATTCTGAGGAGAACATGTCTTGCCCCTTCATACCATCCAATTCAGGAAGTTCATCAGATTCTCAAATTGGTTCCTCAAGACTTCAGTCCATACGAGAAAAAAAACAGTATTCTGATAATAAACAACCGACTAAACATCGTATTTGCAGAACATTTCGAAATAGTCGAGGAAGAAAAGAAACTCATGACTTTAGGACTTCAAAGAATAGCACTTCATTGGCAGGTATGACTGAATTTGTTGGGTTGATAAAGGTGAATGTGGTTAAAGGAATTAATCTTGCTGTTCGTGATGTAATGAGTAGTGATCCTTATGTGATCATATCCCTTGGTCACCAATCAGTGAAGACTCGTGTGATAAAGAACAATTTAAACCCAATTTGGAATGAAAGCCTAATGTTGTCAATTCCTGATAATATTCCTCCTCTTAAAATTATTGTGTATGATAAAGATACTTTCTCCACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAGCCTTTGGTCTCAGCTGCAACAGAATATGAAAAATGTTCAGTCGATAATATGGTCCAGATTGAAAAAATGGTAGCAAGTGGTGACAACACTCTTATTAAAGATGGCATAATCTCCCTTGAAGATGGCAAAATCAAACAAGAGGTCTCAGTGAGACTGCAACATGTTGAGAGAGGTGTGTTAGAGATTGAACTTGAATGTGTTCCTTTAACTCAGTAA 1203 0.3774 MSVQREHHSTNDISGSGSGSCLYDLFCSETPNINAHNLRERWMSSGPQKRLDNLMRQAGNRYCADCGSLEPKWVSTSLGVFICIKCSGVHRSLGVHISKVLSLKLDEWTDEQVDELVKLGGNTVVNKKYEAYLPSNIRKPKPNSSIEERSDFIRRKYEFLQFLDSEENMSCPFIPSNSGSSSDSQIGSSRLQSIREKKQYSDNKQPTKHRICRTFRNSRGRKETHDFRTSKNSTSLAGMTEFVGLIKVNVVKGINLAVRDVMSSDPYVIISLGHQSVKTRVIKNNLNPIWNESLMLSIPDNIPPLKIIVYDKDTFSTDDFMGEAEIDIQPLVSAATEYEKCSVDNMVQIEKMVASGDNTLIKDGIISLEDGKIKQEVSVRLQHVERGVLEIELECVPLTQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2078 400 Pfam C2 domain 245 333 IPR000008 -
Vra5g2078 400 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 242 337 IPR035892 -
Vra5g2078 400 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 400 IPR044518 GO:0005096|GO:0005543
Vra5g2078 400 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Vra5g2078 400 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Vra5g2078 400 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Vra5g2078 400 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Vra5g2078 400 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 170 IPR001164 GO:0005096
Vra5g2078 400 SMART C2_3c 245 340 IPR000008 -
Vra5g2078 400 Pfam Putative GTPase activating protein for Arf 49 164 IPR001164 GO:0005096
Vra5g2078 400 MobiDBLite consensus disorder prediction 173 208 - -
Vra5g2078 400 Gene3D Arf GTPase activating protein 32 171 IPR038508 -
Vra5g2078 400 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
Vra5g2078 400 CDD C2_ArfGAP 243 387 - -
Vra5g2078 400 ProSiteProfiles C2 domain profile. 221 342 IPR000008 -
Vra5g2078 400 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 1 400 - -
Vra5g2078 400 MobiDBLite consensus disorder prediction 173 194 - -
Vra5g2078 400 CDD ArfGap 51 157 - -
Vra5g2078 400 Gene3D C2 domain 242 399 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2078 Vra-Chr5 26532085 26538539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2078 48 400 C2H2 Transcription Factor Family AT4G21160 47.324 4.05e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2078 K12486 - gmx:100799376 600.897