Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2073 ATGTCCAGCGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTTTGCGGTTCTCACAGCCACTGAGCGGGACTCCGATCCAGCCTTCGCTGAGCGCTGCGAAATCTTAAGCGACGGGGGCGAGGTTGGGTTCCGCTCCCAAACCGGCGTCGTTTTGTCTACGGTGCTGAATTCGTCTCAATGCGGCGGCGGCGGCGGCGGCGGAGGATCGAAAACCAAGAGGACGCACAGCGTTGGGATGGTGAATGGGAGCATGAGCGTGGTTCACCAGCTCCACGCTATGGTCACTCGCAAGTGCGCCAAAGTTGACGCACGCGTGGTGTGCGTCGAGTCGCCTAGGGTTGTGCTGCTGGTTGACGTGTATCTTCCTATTCAAGTGTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCAGTTGCCGCCGCGGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGCGAAGTTCAATGCTTTCATATCCAGACTATTGTAGAAAGACTCATGGAGCAAACGAGAGCTTTTGGAACCTTTCTGATTGTCATGTACTTTGTTGCAAGCTCCATCCCCATGTTAGCAGTTCTTCAAGGAAAAGCCTATTTGAACTTCATGAACTTTTCAAGACACTACCTGGCATAGGAAAACAGCGGATGTTTAATAGCTCCAAAATAATTCCTATGGATCACTCATGCAGAGCAGGCATTTGGGAGTTATCTGATGATATTTTAACAAAAATTTTATCTTCCCTTGACCCAATGGACCTCACTAGGGTTTCTGAAACGTGTCGTCATCTAAGATCATTGGCTGCTTCTGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCACACCCTTTATATGCATTTCTCTCAACTGAAGATGGTTTTAGTTTCCATGTAAATACCGTTTCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAGGGATTTTCGAGGAGGAATGTTTTGTGATGAGCCTGGTTTGGGTAAGACTGTAACGGCACTCTCTCTTATTATGAAGACACGAGGTACATTGGCAGATCCACCAGTAGAGGCACAAGTTGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGTTATTATGAGATCTGTGGTAATAACATAACTGGTTGTTCTGCATTGGGTAAAAGGAACGGGAGCCAATATATCAGTAGAACTAATGATAACCATGAATACTCCTCCAAAAGAGCCAGAATGTCAAATCCTGACCAGCAAATGATTAAACTTCAGAGTTCATGTTCCATGGAAGTAAACAAATCACCTGTGGAGGCACGCTTTAAGGAATCTGTGCATTCAAATCAGTACACTAGGAGTTTGAGCCGCATAAAGAAAAACCTATGCTTCACAAATGAAGAGGAAGCTATGATATCCAAGGAAAGAGAAGTTGAAGGATTAATTAAAGCAAAACATGCATCAGATGTTACACCTCATTTATCTCAAAAGAAGCTGCCTGGGAAGCCTCAAGGTGATCCTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTGGCAGACAATAGTATGGCTAGTTCTAGTGCAGCATGGTTTTGTAGTATGAACCCTGACCCTCTTTATCAAAGTTGTAGTGTCCCTGAACAACATTTTCGTTCTACATCTAGGATAACATACTTGCCAGGGTTTCACTTAAAAGGGACTCATGGTGGTGACAGACAAAATGTTTCTTTTTTCACCAGCGTGCTTAAGGAGCACTACTCACTGATAAATTCTCAGACAAAAAAAGCCCTGGCCTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGCTATGGAAACAAATGGAATAAGAGGTCCTATTTTAAACACGTGTACTGCATCTGGCAGACATTTTAATGCCTTCCACAAAGTATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGACAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCACTCCGTGAGCCTATAGATTTTGTCAGGTTATACTTGTCAAGGGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCCGGTCAATTGCGGATTTATGTTTGGACTGATCACCGGAAGCCATCTGTGCATTGTCTTGCATGGGATTACGACATTGTCATAACCACTTTTAGTCGTCTGAGTGCAGAGTGGGGCCCTCGTAAGAGGAGTGTTTTGATGCAAGTACATTGGTTTCGGGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCCTGAACTTAACAAACAAGTTGCAAATGGCCATTTCATTGATAGCTTCTAATCGATGGATACTAACAGGAACTCCTACACCTAACACTCCTAACAGCCAACTTCCACATCTGCAAACATTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTCAGGCCATTTGAAGCAGAAATGGAGGAAGGGAGGTCTCGTCTGTTAGATCTGCTTCACAAATGCATGATTAGTGCTAGAAAGACAGAATTACAAAGCATCCCACCATGCATCAAGAAAGTTGTTTATCTGGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACTGTAAGGCGTAATATATTGATGGCTGATTGGAATGATCCCTCACATGTTGAGAGTCTACTGAATCCAAAGCAGTGGAAGTTTCGTAGGGCAACTATAAAAAATGTCAGGCTTTCGTGCTGTGTTGCTGGACATATTAAGGTTACACATGCTGGTGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTGGATCCTACTTCTGGAGAGTATACCTCCATAAGATGTAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGGTCATTACACCATGTCGGCATTTGTTGTGCCTTGATTGTGTTTCTATTGACCATACGAAGTGTTCTTATCCTGGCTGCAGTAAATTGTATGAGATGCAAAGTAGACTTCCCCGACCTGAAAATCCTAATCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCGTCATATAAGCAGGATAATTGGGATCCAGATTGGCAATCTACATCTAGTACTAAAGTCTCATATCTTGTCCAGAAGTTGAAAGCCTTGCAAGGAACCAACGAAGAGACTAGCTTCTGTACAGACAATAACAATGATGAGATGCCTATTGAGAATAGTTTCTCTCTGCATAGAAGTGATGATAAATCAGCATTTCAAAAATGTTTGAAGAGCAGCACAAAGACCAATTCTAACCTTGAGAAAGTTCTTATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTAGCTATTGCTGGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCCAGTAACAAGAAGAAGTCTTTAGCCACGTTCCAGCATGATTCAAGTTGTATGGCGCTTCTAATGGATGGAAGTGCTGCATTGGGTCTGGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGAATGGGTGCTTCTCGTCCTATTCACGTTGAAACACTAGCTATGCATGGTACAATTGAAGAGCAAATGCTAGGCTTTTTACAGGAAGCTGATAAATGTAGAAGATCGCCAATTAAGGATGTTGCGGAATCTGAGGATGATGGCGGGGGACGAGGATATAAATCATTGCATGATTTTGCAGAAAGCAGTTATCTATTGAAACTAAGATCTGTGTATACTAATTCAGAATGTCCAGAAGGTGTTTTGATCGATCAACATCAAGCAAGTTCTAACTAA 3990 0.4331 MSSDTSFADHKLCGFLFAVLTATERDSDPAFAERCEILSDGGEVGFRSQTGVVLSTVLNSSQCGGGGGGGGSKTKRTHSVGMVNGSMSVVHQLHAMVTRKCAKVDARVVCVESPRVVLLVDVYLPIQVWSGWQFPRSGAVAAAVFRHLSCDWDERSSMLSYPDYCRKTHGANESFWNLSDCHVLCCKLHPHVSSSSRKSLFELHELFKTLPGIGKQRMFNSSKIIPMDHSCRAGIWELSDDILTKILSSLDPMDLTRVSETCRHLRSLAASVMPCTKLNLFPHQQAAVEWMLHRERNAELLPHPLYAFLSTEDGFSFHVNTVSGEIVTGEAPTIRDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPVEAQVVWCQHNGNQKCGYYEICGNNITGCSALGKRNGSQYISRTNDNHEYSSKRARMSNPDQQMIKLQSSCSMEVNKSPVEARFKESVHSNQYTRSLSRIKKNLCFTNEEEAMISKEREVEGLIKAKHASDVTPHLSQKKLPGKPQGDPFEYSDTWIQCDACHKWRKLADNSMASSSAAWFCSMNPDPLYQSCSVPEQHFRSTSRITYLPGFHLKGTHGGDRQNVSFFTSVLKEHYSLINSQTKKALAWLAKISTDKLAAMETNGIRGPILNTCTASGRHFNAFHKVFQAFGLLKRVDKGVCKWFYPQHLNNLTFDVAALGMALREPIDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDHRKPSVHCLAWDYDIVITTFSRLSAEWGPRKRSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQTLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLDLLHKCMISARKTELQSIPPCIKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRCNLLYGGHCVRCKEWCRLPVITPCRHLLCLDCVSIDHTKCSYPGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSTKVSYLVQKLKALQGTNEETSFCTDNNNDEMPIENSFSLHRSDDKSAFQKCLKSSTKTNSNLEKVLIFSQFLEHIHVIEQQLAIAGIKYAGMYSPMHSSNKKKSLATFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMHGTIEEQMLGFLQEADKCRRSPIKDVAESEDDGGGRGYKSLHDFAESSYLLKLRSVYTNSECPEGVLIDQHQASSN* 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2073 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 361 IPR027417 -
Vra5g2073 1329 Gene3D - 1066 1301 IPR027417 -
Vra5g2073 1329 ProSiteProfiles F-box domain profile. 232 284 IPR001810 GO:0005515
Vra5g2073 1329 ProSiteProfiles Zinc finger CW-type profile. 519 570 IPR011124 GO:0008270
Vra5g2073 1329 Gene3D - 686 882 IPR038718 -
Vra5g2073 1329 SMART helicmild6 1159 1241 IPR001650 -
Vra5g2073 1329 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 32 1300 - -
Vra5g2073 1329 Pfam SNF2-related domain 283 923 IPR000330 GO:0005524|GO:0140658
Vra5g2073 1329 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 682 837 IPR014001 -
Vra5g2073 1329 PANTHER OS01G0952200 PROTEIN 32 1300 - -
Vra5g2073 1329 Gene3D - 520 572 - -
Vra5g2073 1329 SUPERFAMILY F-box domain 229 271 IPR036047 GO:0005515
Vra5g2073 1329 CDD SF2_C_SNF 1146 1251 - -
Vra5g2073 1329 CDD RING-HC 1000 1024 - -
Vra5g2073 1329 Pfam CW-type Zinc Finger 524 567 IPR011124 GO:0008270
Vra5g2073 1329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1137 1287 IPR001650 -
Vra5g2073 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 1295 IPR027417 -
Vra5g2073 1329 SMART ultradead3 276 848 IPR014001 -
Vra5g2073 1329 SMART fbox_2 238 278 IPR001810 GO:0005515
Vra5g2073 1329 Pfam F-box domain 237 272 IPR001810 GO:0005515
Vra5g2073 1329 CDD DEXDc_SHPRH-like 701 878 - -
Vra5g2073 1329 Gene3D - 236 272 - -
Vra5g2073 1329 Pfam Helicase conserved C-terminal domain 1136 1241 IPR001650 -
Vra5g2073 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 877 IPR027417 -
Vra5g2073 1329 ProSitePatterns Zinc finger RING-type signature. 1015 1024 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2073 707 1261 RAD5 or RAD16-like Gene Family AT5G22750 25.042 7.18e-43 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra5g2073 SNF2_N 1.3e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2073 - - gmx:100803102 2301.17