Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2072 ATGTTTGTGCCAAACTTCATCTGGCAAAGGATGGAAGTAATTGCTCAGATAGTATTACAAAACTTGAACTCTTTTGCTCAAGAGGAGTTTGGAATCATTTGGAATCTCAAAGATGACGTACAGCAAATGAAGCGCACAGTATCTGCAATAAAGGCTGTGCTCCTGGATGCAGAGGGAAAGGCCAACAACCTTCAAATCAGTAATTGGTTGGAGGAGCTGAAAGATGTACTTTATGATGCAGATGACTTGCTCAATGATATCTCCTCTGAAGCAATGAAAAGAAAAGTGATAGGTGCTAGAAAAATCTTGAGAAAGATACAGGTTTTCTTCTCCCAAGAAAACCAAATTGTCTATAGTTTTAAATTAGGTCATCAGATGAAAGCAATCCAGAAGAGGCTAGATGCTATTGCTAAAAACAAGATTACTTTGCAATTGACTGACCGCCCTATGGAGACTCCAATTGCATATAGGAGGCAGAGACAAACTTACTCTTTTGTGAGAGAAGATGATGTTATTGGGAGAAAGGAGGAAAAGAAACTTCTTGAAAGTTATTTGCTTGACACCAAAGTGAGTGTGATAGACAATGTGTCTGTATTAGCCATAGTTGGGTTTGGAGGACTAGGTAAGACTACCCTCGCTCAACTTGTTTTTAATGACAATGCTGTCCAATGCTCTTTTGAGCAGAAAATGTGGGTGTGTGTCTCAGATGAATTTGACATCAGCAAAATAGCCGAAAAGATGATTGGGAATGATAAGAATAGTGAGATTGAGCAACTACAGCAAGATCTTAGAAACAAAGTTCGTGGAAAAAAGTTTCTACTTGTGCTGGATGACGTGTGGAATGAGGATAGGGAACTGTGGCTTAAATTCAAGAGCTTAGTCGTGGAAGGAGGTAAAGGAAGTGCCATAATTGTAACAACACGTAGTAGGACTGTGGCGAAAATAGTAGCCACACATCCACCCCTTTTCTTGAAAGGTCTTGATTTAGAAAGATCTTGGAAGCTATTCTCTCGAGTGGCTTTTGATGAGGGGAAAGAACCAAATGATATGGAGTTGTTAGCCATGGGAAGGGATATTGTTAAAAAATGTGCTGGGGTTCCCCTTGCCATAAGAACTATTGGCAGCCTCTTGTACTCTCGAAACTTGGGTCGGAGTGATTGGCAATATTTTAGTGAAGTTGAGTTTTCAAAGATAGATCAACACAAGGACAACATTTTTTCAATCCTTAAACTGAGTTATGATCATCTTCCTTCATTTTTGAAAAAGTGTTTTGCTTATTGTTCATTGTTTCCAAAAGATTTTGAGTTTGACAAGAAAACACTCATTCAGTTATGGGTGGCTGAGGGGTTCATTCAACCATCACGAGACAATAGATGTGAAGAAGATGTTGGTCATGAGTACTTCATGAATTTGCTGTCAATGTCACTTTTCCAAAATGTGACTTTAGATGATTGTGGTGACATTCTTACTTGTAAAATGCATGACCTGATACATGATCTAGCACAGCTTGTTGTTGGAAAAGAATACGCCTTTGTTGAAGGAAAAAAAGAGCACATTGAAAACAGAACACGTTATTTGTCCTCTTGTACTTCATTACATTTTTCAGAGAAAACATCATCATCTTCCAACAAGTTAAGGACATTTATTTTGCTTGGACAGCCAGTTTATGGAAGTCAAAATTTGGGTCCTCCGCCAAGTCTTCAATTTCCTTTTCTCTTAAGCATAAAGTGCCTACGGGTGTTAACACTCTGTGGGTTGCATTTGATAACAATTCCAAATAGTATTCGGGAGTTGAAGCAATTGAGATATCTTGATCTTTCAATGAATAGGTTTCTGGTAAGTCTTCCACCAGATGTTACTAGCCTACATAACTTGCAGACTTTAAAACTTTCTGGATGTGGCAAACTTAAAGAATTACCCTCAGATATCAACAAAAGTCTTAGGCATCTTGAATTGAATGATTGTGGGAAATTATGTATGCCATGTGGGTTGGGACAATTGACCAATCTTCAAACACTGACACATTTTATATTGGACTCTGAAAGTAAAAACGTTGATATAAGTGAATTGAGTGGGCTAAACAACCTTAGAGGGAAATTAGTAATCAAATGCTTGGATTCCCTGCGAAAAAATGCTGCAGTGGTTGAGTCTGCAAACATATTACTGGAGAAGCAACATCTTCAAGATTTGGAATTACGGTGGGGGCTCGGTGAGACTAAATATTGGGTTGGTCCTATTGAAATCAGACGTAAGGAAGATGAAAACACATGGGTGGAAAATGAAACGACCCTGTATATAAATGATAAATATCAAATGAAAGATGAAAAGATATTGCAAGGCCTGCAGCCACATCATTCAATAAAAAGACTAGTCATAGATGGATATCATGGCAACAGTTTACCAGACTGGATAGGGAACCTCTCATCACTCTTGAGTCTTAAAATCAGTAATTGCTATGGTTTGAAATCAATACCTGATGGAATTCGGAACCTAGTATCTTTACAACGACTCTGCATATATAGGTGCTCAATGCTAGAAAGAAGATGTGCTAGAGGACATGGTGGAGAATGGTCAAAAATTGCTCATATCCCAGAAGTTCTTCTCCCTGCCTTTAATCCAATCGCCTTTAATGCAACCGATCTCAGGCAGCAACCACTTGTTTGTGTCAATCACCATTTTCTAGCAATGGCTCCATGGTTCATGTTGCTTGTGGAAAAAATGACAATGTGGAAGCACCCAATTGATAGACAAAAATTGCAAATTGTTGCCTGCATAATAAATCAGATTTTGATGGTAAATGGCAGCGCATCATCTATGAACAGTTTAAGATAA 2832 0.3838 MFVPNFIWQRMEVIAQIVLQNLNSFAQEEFGIIWNLKDDVQQMKRTVSAIKAVLLDAEGKANNLQISNWLEELKDVLYDADDLLNDISSEAMKRKVIGARKILRKIQVFFSQENQIVYSFKLGHQMKAIQKRLDAIAKNKITLQLTDRPMETPIAYRRQRQTYSFVREDDVIGRKEEKKLLESYLLDTKVSVIDNVSVLAIVGFGGLGKTTLAQLVFNDNAVQCSFEQKMWVCVSDEFDISKIAEKMIGNDKNSEIEQLQQDLRNKVRGKKFLLVLDDVWNEDRELWLKFKSLVVEGGKGSAIIVTTRSRTVAKIVATHPPLFLKGLDLERSWKLFSRVAFDEGKEPNDMELLAMGRDIVKKCAGVPLAIRTIGSLLYSRNLGRSDWQYFSEVEFSKIDQHKDNIFSILKLSYDHLPSFLKKCFAYCSLFPKDFEFDKKTLIQLWVAEGFIQPSRDNRCEEDVGHEYFMNLLSMSLFQNVTLDDCGDILTCKMHDLIHDLAQLVVGKEYAFVEGKKEHIENRTRYLSSCTSLHFSEKTSSSSNKLRTFILLGQPVYGSQNLGPPPSLQFPFLLSIKCLRVLTLCGLHLITIPNSIRELKQLRYLDLSMNRFLVSLPPDVTSLHNLQTLKLSGCGKLKELPSDINKSLRHLELNDCGKLCMPCGLGQLTNLQTLTHFILDSESKNVDISELSGLNNLRGKLVIKCLDSLRKNAAVVESANILLEKQHLQDLELRWGLGETKYWVGPIEIRRKEDENTWVENETTLYINDKYQMKDEKILQGLQPHHSIKRLVIDGYHGNSLPDWIGNLSSLLSLKISNCYGLKSIPDGIRNLVSLQRLCIYRCSMLERRCARGHGGEWSKIAHIPEVLLPAFNPIAFNATDLRQQPLVCVNHHFLAMAPWFMLLVEKMTMWKHPIDRQKLQIVACIINQILMVNGSASSMNSLR* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2072 943 PANTHER DISEASE RESISTANCE PROTEIN RP 37 839 IPR044974 GO:0006952
Vra5g2072 943 SUPERFAMILY L domain-like 492 844 - -
Vra5g2072 943 CDD RX-CC_like 12 138 IPR038005 -
Vra5g2072 943 Gene3D Ribonuclease Inhibitor 557 858 IPR032675 -
Vra5g2072 943 Gene3D - 15 127 - -
Vra5g2072 943 PANTHER OS05G0414200 PROTEIN 37 839 - -
Vra5g2072 943 PRINTS Disease resistance protein signature 198 213 - -
Vra5g2072 943 PRINTS Disease resistance protein signature 266 280 - -
Vra5g2072 943 PRINTS Disease resistance protein signature 363 377 - -
Vra5g2072 943 PRINTS Disease resistance protein signature 596 612 - -
Vra5g2072 943 Pfam NB-ARC domain 195 414 IPR002182 GO:0043531
Vra5g2072 943 Pfam Rx N-terminal domain 16 103 IPR041118 -
Vra5g2072 943 Gene3D - 413 503 IPR036388 -
Vra5g2072 943 Gene3D - 156 319 IPR027417 -
Vra5g2072 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 427 IPR027417 -
Vra5g2072 943 Gene3D - 327 412 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2072 Vra-Chr5 26461591 26466490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2072 195 544 WRKY Transcription Factor Family AT5G45050 23.450 4.71e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2072 - - gmx:100781872 1236.09