Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2068 ATGAGCATGTTAGGCCTTAGAGACCTAGTGCTCATAGCTCAAACACCTTCCCTGCACCAAGGCCAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTTCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCTCACCAAACCAATGAAATTCAAGACTGTGCTGCTGCTGGTGGTGGTGGCAACACCACCACCACCACCACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCGAAGAAGGGTGTGATCAACATGGATGATGATGATGATGATGAGGACGACGACGAGAGACATCATCACCATAAGGGTGTGATGGAGAGCGAAGAAAACGGAATTTATGGACCTGACTTCCGGGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGTGGATACGATTGCAGCACTCATGTGAAGAGCACGTGGGTCCCTTCAATTCGCCGCCGGGAGCGGGAAATGGTGGTGGCTCCCGCCGGAGGCGTTGGTGGTGGCAGTAAGAGGCCAAGAGCTATAGTGGGGTCCTCACAAAATGCCACTGCCACTTCTCACAGCTCCAACTCCAATGCTACAACGCCTAAAAGCTTAGCCACAATCTCTTCTCACCAAGATGCTAGCTTCAAACAGTCTTTACCTGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCCTACTTGGCAACGGTGCATATCAGTGGCCATGTGTTCAAAGGGTTTCTCTATGACCATGGAGTTGATGGGAAAATTGCAAATGCAGTGCCTTGTGTTTCGGAATTGCAACTGGGAAACAATTGCAGTGGCAAGAACAGAGAATGTTCTTCTGCAATTGGACTTCCAAATAACAATGCATACCCTGCTTCTGCCACCTGA 1005 0.4995 MSMLGLRDLVLIAQTPSLHQGQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQTNEIQDCAAAGGGGNTTTTTTTTNYWNLKMCPEVNPPKKGVINMDDDDDDEDDDERHHHHKGVMESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRREREMVVAPAGGVGGGSKRPRAIVGSSQNATATSHSSNSNATTPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKIANAVPCVSELQLGNNCSGKNRECSSAIGLPNNNAYPASAT* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2068 334 MobiDBLite consensus disorder prediction 104 130 - -
Vra5g2068 334 MobiDBLite consensus disorder prediction 190 226 - -
Vra5g2068 334 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 139 181 IPR006510 -
Vra5g2068 334 MobiDBLite consensus disorder prediction 203 226 - -
Vra5g2068 334 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 333 - -
Vra5g2068 334 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 243 290 IPR006511 -
Vra5g2068 334 Pfam Domain of unknown function (DUF702) 139 291 - -
Vra5g2068 334 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 333 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2068 Vra-Chr5 26357070 26360166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2068 140 329 C2H2 Transcription Factor Family AT5G12330 53.202 1.47e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vra5g2068 DUF702 2.1e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2068 - - vun:114175485 587.8