Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2064 ATGGACACCAAATTGTTAACAATCCGTACACTGGTCTCCTCCCTCGCTTCCTCCTCCGACCAAACCCGTCTCGCCGCCCTCCGCCACCTCCGCCGCACCTCCAACGAGGATCCCGCCGCCCGCCCTCTCATCTCCGCCGCCGGTGCCGTACCCCTCCTCGCCGCCGCCCTCTACTCCCCCTCCCACCCCATCCAAGACCACGCCGCCGCCACCCTCCTCAACCTCTCCATCTCCGACCGCCGCCCCCTCCTCTCCTGCCCCGCCCTCTTACCCGCCCTCGCCCACATCCTCTCCCGTCACGCCACCTCCTCCGCCCCATCCGCCGTCCAATCCGCGGCTGCCACCCTCCACAGCCTCCTCGTCGTGGTAGCCGAGTTCCGCCCCGCCGTCGGTGCAAAACCCGAAATTCTTCGTGCCCTCATCAGCATAATGAGTGATCCCGATTCGCTGACGAGGACGATCAAGGATGCTCTAAAAGCATCTTTCGGAATTGCACTCTACCCGCCGAGCCGAACAGCACTGGTCCGGCTTGGCGCAGTTCCCGTGCTCTTCGCTCTGGTGGCGAAGGACAAGGACGGGAAGAGAAAAGTTGGCATAATTGAGGATGCGACGGCGGTGATCGCGCAGATTGCGGGGTGCGAGGAGAGCGAGGAGGCGTTTCTTAAGGTTTCGGGGGTTTCTAGGTTGGCCATGATGCTGTGTTCGGAAAGTGGAAACTGTAGTTTGAGGACAAAGGAGAATGCTGTTGCGGCGCTGTTGAATCTGGTGAGATATGGGAGTGAGAGAGTAGTTGGGGAAGTTAAGAACAAGGTTGGGTCCTTGGATGGGATCTCCTACGTGCAGGAACACGGTAGCCCCAAAGGGAAGAGCAAGGCCGTGGCTTTTTTCAAGCTTCTTCTTGATGGTGGAAGCAGTGCTGAAATTGCTCAAGATTTGTACCCTGTGCACTCTGATTCGGCTTCCTACTGA 969 0.5955 MDTKLLTIRTLVSSLASSSDQTRLAALRHLRRTSNEDPAARPLISAAGAVPLLAAALYSPSHPIQDHAAATLLNLSISDRRPLLSCPALLPALAHILSRHATSSAPSAVQSAAATLHSLLVVVAEFRPAVGAKPEILRALISIMSDPDSLTRTIKDALKASFGIALYPPSRTALVRLGAVPVLFALVAKDKDGKRKVGIIEDATAVIAQIAGCEESEEAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVGSLDGISYVQEHGSPKGKSKAVAFFKLLLDGGSSAEIAQDLYPVHSDSASY* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2064 322 Gene3D - 4 297 IPR011989 -
Vra5g2064 322 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 305 - -
Vra5g2064 322 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 48 76 IPR000225 GO:0005515
Vra5g2064 322 PANTHER U BOX DOMAIN-CONTAINING 2 305 - -
Vra5g2064 322 SUPERFAMILY ARM repeat 7 300 IPR016024 -
Vra5g2064 322 Pfam Armadillo/beta-catenin-like repeat 40 76 IPR000225 GO:0005515
Vra5g2064 322 SMART arm_5 37 77 IPR000225 GO:0005515
Vra5g2064 322 SMART arm_5 213 257 IPR000225 GO:0005515
Vra5g2064 322 SMART arm_5 167 212 IPR000225 GO:0005515
Vra5g2064 322 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 225 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2064 8 299 U-box Gene Family AT1G23030 27.986 1.10e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2064 - - vun:114176946 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2064 5 26327757 26329518 Vra5g2064 5 26327757 26329518 ECH