Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2063 ATGGAGGAGAAATCAGAGAAGCAAGATGATAGCCACCCATCTCTCTTCTTCTCGGATCATGCAACCATCAAGGAAGAGAATTCTCCAAGAAAAGCCATTGGTGGTGGCAGTGATAGGCTGAAGAGAGATGAATGGAGTGAAGGGGCTGTGTCAACCCTTCTTGAGGCTTATGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAGGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCATCAAGAGCCAACTCCACCAAGTCACCAAAGACACAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAAAAAAGGTACAGATCAGAGTCTGCAACCACTGCTGATGCATCATCTTGGCCTTTGTACTCTCGCCTTGATCTTCTCCTGCGTGGCACAGGACCATTATCTTCACTTCCGCCAACACCAACACCAACACCAACAATAGCACCATCATTTCAACCACCACACGCCACCACCAATAGTAACCAGGCTCTGGTGTTGTTGGATCCTCCTTCACTGGCTGTGTCACAAGCTCCTCCTTCTGCTGCTCCTCCACCACCCACACAAAACTCTCACGGATCCAATGGTGTTGAAAAACTAGTCAAGGAAGATGGGTTAGGAGGAAAGTCATGTGAGCATGTATCTGACAAGAATGTGATGGACTCGGATAGTAGCACACCTGCTCTATACAGTGAAAAGGAGAAGGTGAGATGCAACAAGAGGAAGATGAAAAGTGAGAACAACAAGAGGGTGAGAAGGAACAGTAACAACAGTGATAACAATAACCAAAACAGTGAAGACATGGAGATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTGGTAATGAGGTCAGAACAGACCAGAATGGAGACAATGAAAGAGATTGAGAAGATGAGGGTTGAAGCTGAGGCAAAGAGAGGGGAGATGGAGCTGAAGAGAACTGAAATCATAGCCAACACTCAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTAA 1041 0.4573 MEEKSEKQDDSHPSLFFSDHATIKEENSPRKAIGGGSDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDLLLRGTGPLSSLPPTPTPTPTIAPSFQPPHATTNSNQALVLLDPPSLAVSQAPPSAAPPPPTQNSHGSNGVEKLVKEDGLGGKSCEHVSDKNVMDSDSSTPALYSEKEKVRCNKRKMKSENNKRVRRNSNNSDNNNQNSEDMEIAESIRWLAEVVMRSEQTRMETMKEIEKMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2063 346 MobiDBLite consensus disorder prediction 23 41 - -
Vra5g2063 346 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 24 342 - -
Vra5g2063 346 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 24 342 IPR044823 -
Vra5g2063 346 MobiDBLite consensus disorder prediction 139 153 - -
Vra5g2063 346 MobiDBLite consensus disorder prediction 1 41 - -
Vra5g2063 346 MobiDBLite consensus disorder prediction 199 221 - -
Vra5g2063 346 Pfam Myb/SANT-like DNA-binding domain 42 129 IPR044822 -
Vra5g2063 346 Gene3D - 45 110 - -
Vra5g2063 346 MobiDBLite consensus disorder prediction 176 269 - -
Vra5g2063 346 Coils Coil 294 314 - -
Vra5g2063 346 MobiDBLite consensus disorder prediction 135 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2063 Vra-Chr5 26321474 26324080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2063 5 329 Trihelix Transcription Factor Family AT3G14180 25.668 4.84e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra5g2063 Myb_DNA-bind_4 8.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2063 - - gmx:100799917 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2063 5 26321474 26324080 Vra5g2063 5 26321474 26324080 ECH