Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2060 ATGAAAATCCCGTGTTGTCCGGTTTGCCAAACGCGTTACAACGAGGAGGAGAGAGTTCCTCTTCTGCTCCAATGCGGCCACGGATACTGCAGAGAGTGTCTCTCTAGAATGTTCGCTCCCTCTTCGGACGCTACGCTGGCGTGTCCCAAGTGCCGACACGTGTCCACCGTGGGGAACTCTGTGCAGGCGCTGCGGAAGAATTACGCGGTGCTCGCGCTGGTCCACTCCACGACTGCCGCCGCCAACGGCGTCGGGGGTGGAGGGGGAGGGGAGAATTTCGACTGGGACTACACCGACGAGGAGGAGGAGGAGGACGCTGGAGGGGAGGAGGATGAGGACGACGAGAAGCGGCGACGGAACAGCCGCGAGTCGCAGGCGTCGAGCTCTGGCGGGTGCGAGCCGGTGATCGAGGTCGGTGGCGGCGCGCACCAGGACCTGAAGTTGGTGCGGCGGATTGGAGAGGGGAGGAGGGCGGGAGTGGAGATGTGGATGGCGGTGATCAGCGGTGGCGGTGGTGTGGAAGGGGGACGGAGGTGCCGCCACAGCGTGGCGGTGAAGAAGGTGACTGTGGTGGAGGGGATGGATTTGGATTGGGTTCAGGGAAAGTTGGAGGATTTGCGCAGGGCTTCGATGTGGTGTAGGAATGTGTGCACTTTCCATGGGACAATGAGGGTGGAGGACAGTTTGTGCCTCGTGATGGATAAGTGCTATGGATCGGTTCAGTCCGAGATGCAGCGCAATGAGGGAAGGCTCACTTTGGAACAAGTCCTAAGATACGGGGCTGACATTGCCCGAGGGGTCGTTGAACTTCATGCTGCAGGCGTTGTTTGCATGAATTTAAAACCATCCAATCTTCTTCTTGACGCAAATGGTCACGCCGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCATGTTGGAAGGCACGACCAGAGTGTGACTCTGTGAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACAGCACCGGAGGCTTGGGAACCTGTGAAGAAGTCGTTAAATTTGTTTTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTTCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATCTATCGAGCTGTTGTTAAAGCTAAGAAACTGCCTCCACAGTATGCTAGTGTGGTTGGAGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCTATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAATAAGGGCTCTGTATCAAATGTGATCGAGCCTTCACCTGTACCTGAATTGGAAGTTCCTCAGGAAAACCCTAACCATCTTCACCAACTTGTGTCTGAAGGAGATACTGCAGGTGTTAGAGATCTTCTTGCAAAGGCTGTATTAGAAAATGGCAGCAACTACCTAACTTCGTTATTGGAAGCACAAAATGCTCATGGACAAACAGCTCTCCACTTAGCTTGTAGACGGGGCAGTGCAGAACTTGTCGAGACAATTTTGGAGTATAGAGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGGTCCCTAGAATGTGTTTGTAGCCTTATGAAAAGAAATGCTAATGTGCAGTCAAGATTGAGAGACGGTATTGGTCCATCTGTAGCTCACGTTTGTGCCTATCATGGCCAGCCAGATTGTATGCGAGAATTACTATTAGCCGGAGCTGATCCTAATGCGGTGGATGAAGAAGGTGAATCTGTTCTGCATAGAGCAATTTCCAAGAAGTACACGGACTGTGCACTTGTAATATTGGAGAATGGAGGATGTAAATCAATGTCCATCGTGAATTCAAAGAACCTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTGAAGAGATGGGCAGAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCATTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAGAAAGAGGGCAGAGAACTGGTGCAGATACTGCTTGCAGCTGGAGCTGATCCCTCTGCTCAAGATTCACAAAATGGGAGGACAGCATTGCATACAGCTGCTATGACTAATGATGTCGACTTGGTTCAGGTTATTCTGGCTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATTCCTCTTCACTTGGCCTTAGCTAGGGGTGCTAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGAGCAGATTATAATTTGCAGGATGACGACGGTGACAATGCTTTCCATATAGCAGCTGAGACAGCAAAAATGATTCGTGAAAATATGAACTGGCTTATTATTATGCTAATGAATCCTGATGCTGATATTGAAGTCAGAAACCACAGTGGCAAGACGCTACGTGACATTTTGGAGGCGCTCCCCCGAGAATGGATATCCGAAGATCTGATGGAAGCACTCTCAAATAGGGGAGTTCATTTGTCTCCTACATCATTTGAAGTGGGAGAGTGGGTGAAGTTTAAAAAATCTGTCACAACTCCAACACATGGATGGCAAGGTGCTAATCCACAAAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAAAGATAATCTCGTTGTTTCATTTTGTTCTGGAGAGGTTCATCTTCTGGCAAATGAAGTTATAAAAGTCATTCCATTGGACAGGGGACAACATGTACAACTGAAAGAAGATGTAAAAGAGCCTAGATTCGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGATGATGATGGAATTCTCCGTGTTGGGTTTCCCGGAGCATCTAGAGGATGGAAGGCTGACCCAGCAGAGATGGAACGTGTTGAAGAATTCAAGGTTGGAGACTGGGTTCGCATTCGTCCAACTCTTACATCTGCAAAGCATGGACTAGGATCTGTGACTCCAGGAAGCATTGGCATTGTATATTGTATACGGCCAGACAGCAGTCTGTTAGTAGAACTGAGTTATCTTCCAAATCCATGGCATTGTGAGCCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGGATTGGTGATCGGGTATGCGTGAAACGGTCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGCGAGATTGAGAATGATGGTCTCTTAATTATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCCTCGGATATGGAGAAGGTGGAAGATTTCAAGGTTGGAGATTGGGTAAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGAAGATATTACAAGGAATAGCATTGGTGTAATTCATGGCCTCGATGAGGATGGTGATATGATTGTTGCTTTTTGCTTCAGAAGTAAGCCTTTCTCTTGCTCAGTCACTGATGTGGAGAAAGTTCCTCCATTTGAGGTGGGACAAGAAATTCATGTGATTGCATCAGTTACTCAGCCTCGTCTTGGGTGGTCAAATGAATCACCAGCTACCGTTGGAAAAGTAGTGAGAATAGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAGCGGCTTCCAGGATTTGAAGTTGGGGATTGGGTTCGCTCAAAACCAAGCCTTGGAACCAGACCAAGCTATGACTGGAATAGTGTTGGGAGAGAAAGTTTAGCTGTTGTGCATAGCGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGCAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAGGGTTCCTAGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGAACTGGTTTGGTTGAACCAAGGTGGGGCTGGAGAGGAGCTCGGCCTGAATCTCAAGGGGTTATAACCAGTATTCATGCTGATGGAGAAGTCAGGGTCGCATTTTTTGGTCTTCCAGAACTGTGGAGAGGAGATCCTTCAGACCTTGAGATCGAACAAATATTTGAAGTGGGAGAGTGGGTGAGGTTGACAGAAAATGCAAATAATTGGAAATCAATTGGACCAGGTAGTGTTGGTGTGGTTCAAGGAATAGGGTATGAAGGAGATGAATTGGACAGAAGCATTTTTGTTGGATTTTGTGGGGAACAGGAAAAGTGGGTAGGACCTACTTCACATCTTGAAAGATTTGACAAACTCTTTGTTGGACAGAAGGTTAGAGTGAAACAATATGTGAAGCAACCAAGATTTGGATGGTCAGGGCATACCCATGCTAGTCTTGGGACCATACAGGCTATTGATGCTGATGGAAAGCTTCGAATATACACACCAGCAGGATCCAGAACATGGATGTTGGACCCATCAGAAGTGGAGGTGATAGAAGAGAAGGAGCTCTGTATTGGTGACTGGGTGAGGGTTAAAGCTTCGGTTTCAACCCCAACACACCATTGGGGTGAAGTGAGTCATTCAAGCATTGGAGTTGTGCATAGAATGGAAGATGAAGATCTTTGGGTGGCTTTCTGTTTCATGGAGAGGCTATGGCTTTGTAAGGCTTGGGAAATGGAACGGGTTAGGCCATTTAAAGTGGGTGACAAGGTAAGGATCAGAGATGGACTGGTGAACCCACGTTGGGGATGGGGAATGGAGACTCATGCTAGCAAGGGAGAGGTTGTAGGGGTAGATGCAAATGGAAAACTAAGAATAAAATTCCGGTGGAGGGAAGGGAGGCCATGGATAGGAGATCCTGCTGATCTTGCCCTTGATGAAGACTGA 4914 0.4758 MKIPCCPVCQTRYNEEERVPLLLQCGHGYCRECLSRMFAPSSDATLACPKCRHVSTVGNSVQALRKNYAVLALVHSTTAAANGVGGGGGGENFDWDYTDEEEEEDAGGEEDEDDEKRRRNSRESQASSSGGCEPVIEVGGGAHQDLKLVRRIGEGRRAGVEMWMAVISGGGGVEGGRRCRHSVAVKKVTVVEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSVKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDNKGSVSNVIEPSPVPELEVPQENPNHLHQLVSEGDTAGVRDLLAKAVLENGSNYLTSLLEAQNAHGQTALHLACRRGSAELVETILEYREANVDVLDKDGDPPLVFALAAGSLECVCSLMKRNANVQSRLRDGIGPSVAHVCAYHGQPDCMRELLLAGADPNAVDEEGESVLHRAISKKYTDCALVILENGGCKSMSIVNSKNLTPLHLCVATWNVAVVKRWAEVATSDEIAEAIDIPSPIGTALCMAAASKKDHEKEGRELVQILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVQVILAAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENMNWLIIMLMNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALSNRGVHLSPTSFEVGEWVKFKKSVTTPTHGWQGANPQSVGFVQSVPDKDNLVVSFCSGEVHLLANEVIKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLVELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHGLDEDGDMIVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVIASVTQPRLGWSNESPATVGKVVRIDMDGALNVRVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVERVPSFKVGQYVRFRTGLVEPRWGWRGARPESQGVITSIHADGEVRVAFFGLPELWRGDPSDLEIEQIFEVGEWVRLTENANNWKSIGPGSVGVVQGIGYEGDELDRSIFVGFCGEQEKWVGPTSHLERFDKLFVGQKVRVKQYVKQPRFGWSGHTHASLGTIQAIDADGKLRIYTPAGSRTWMLDPSEVEVIEEKELCIGDWVRVKASVSTPTHHWGEVSHSSIGVVHRMEDEDLWVAFCFMERLWLCKAWEMERVRPFKVGDKVRIRDGLVNPRWGWGMETHASKGEVVGVDANGKLRIKFRWREGRPWIGDPADLALDED* 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2060 1637 CDD RING-HC_ScPSH1_like 5 52 - -
Vra5g2060 1637 MobiDBLite consensus disorder prediction 94 111 - -
Vra5g2060 1637 ProSiteProfiles Ankyrin repeat region circular profile. 739 770 - -
Vra5g2060 1637 ProSiteProfiles Ankyrin repeat region circular profile. 772 804 - -
Vra5g2060 1637 ProSiteProfiles Ankyrin repeat region circular profile. 524 546 - -
Vra5g2060 1637 Pfam Ring finger domain 6 52 IPR001841 -
Vra5g2060 1637 Gene3D Transferase(Phosphotransferase) domain 1 236 456 - -
Vra5g2060 1637 MobiDBLite consensus disorder prediction 449 480 - -
Vra5g2060 1637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Vra5g2060 1637 Pfam Mind bomb SH3 repeat domain 1513 1632 IPR040847 -
Vra5g2060 1637 Pfam Mind bomb SH3 repeat domain 931 998 IPR040847 -
Vra5g2060 1637 Pfam Mind bomb SH3 repeat domain 1256 1377 IPR040847 -
Vra5g2060 1637 Pfam Mind bomb SH3 repeat domain 1130 1248 IPR040847 -
Vra5g2060 1637 Pfam Mind bomb SH3 repeat domain 1383 1504 IPR040847 -
Vra5g2060 1637 Pfam Mind bomb SH3 repeat domain 1060 1124 IPR040847 -
Vra5g2060 1637 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Vra5g2060 1637 Gene3D - 592 653 IPR036770 -
Vra5g2060 1637 Pfam Protein kinase domain 180 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2060 1637 SUPERFAMILY RING/U-box 5 61 - -
Vra5g2060 1637 ProSiteProfiles Ankyrin repeat profile. 524 557 IPR002110 GO:0005515
Vra5g2060 1637 Gene3D - 654 778 IPR036770 -
Vra5g2060 1637 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1636 - -
Vra5g2060 1637 SMART ANK_2a 593 622 IPR002110 GO:0005515
Vra5g2060 1637 SMART ANK_2a 739 768 IPR002110 GO:0005515
Vra5g2060 1637 SMART ANK_2a 699 734 IPR002110 GO:0005515
Vra5g2060 1637 SMART ANK_2a 805 840 IPR002110 GO:0005515
Vra5g2060 1637 SMART ANK_2a 524 554 IPR002110 GO:0005515
Vra5g2060 1637 SMART ANK_2a 558 587 IPR002110 GO:0005515
Vra5g2060 1637 SMART ANK_2a 772 801 IPR002110 GO:0005515
Vra5g2060 1637 SMART ANK_2a 626 657 IPR002110 GO:0005515
Vra5g2060 1637 SMART ANK_2a 661 692 IPR002110 GO:0005515
Vra5g2060 1637 Gene3D - 779 864 IPR036770 -
Vra5g2060 1637 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Vra5g2060 1637 Gene3D - 473 591 IPR036770 -
Vra5g2060 1637 PRINTS Ankyrin repeat signature 525 540 IPR002110 GO:0005515
Vra5g2060 1637 PRINTS Ankyrin repeat signature 721 735 IPR002110 GO:0005515
Vra5g2060 1637 SUPERFAMILY Protein kinase-like (PK-like) 140 452 IPR011009 -
Vra5g2060 1637 Pfam Ankyrin repeats (3 copies) 503 586 IPR002110 GO:0005515
Vra5g2060 1637 Pfam Ankyrin repeats (3 copies) 718 803 IPR002110 GO:0005515
Vra5g2060 1637 Pfam Ankyrin repeats (3 copies) 599 672 IPR002110 GO:0005515
Vra5g2060 1637 ProSiteProfiles Protein kinase domain profile. 146 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2060 1637 ProSiteProfiles Ankyrin repeat profile. 772 804 IPR002110 GO:0005515
Vra5g2060 1637 SMART ring_2 6 51 IPR001841 -
Vra5g2060 1637 MobiDBLite consensus disorder prediction 81 138 - -
Vra5g2060 1637 SUPERFAMILY Ankyrin repeat 519 847 IPR036770 -
Vra5g2060 1637 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Vra5g2060 1637 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1636 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Vra5g2060 1637 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2060 Vra-Chr5 26252066 26271046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2060 170 472 MAP Kinase Kinase Kinase AT1G53570 24.595 5.67e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vra5g2060 Pkinase 7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2060 K16279 - gmx:100777576 3108.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2060 5 26252066 26271046 Vra5g2060 5 26252066 26271046 ECH