Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2057 ATGGCATCCATCGATAAGCAAAAGAGAGAAGAAAAGGAACCGTACAGAATGGAAGAAGAAGAAGAAGACGAAGATAGCGAAGATGAAGAAGCATGGGACGATTGGGAAGGAGAGCGAGAATCGGAATTCGCGTGTCTCTTCTGTGACTCCCAGTACAGTTCGTGCAGTTCCTTGTTCGATCATTGCGCCTCCCTTCACCATTTCGATTTCCACGCGATTAGAGCAATTCTTAAACTGGATTTCTATGCTTCCTTCAAGCTCATCAACTTCGTTCGCTCTCAGGTGTCAGAGAACAAATGTTGGAGTTGTGGATTAACATGCCAGTGCAAGCGTGACTTGCAGAATCATTTGCATGATGTGGTTGACTTTAATGAGATAAAGACTCTATGGAATGATGATAGATATCTAATACCTTTCATGCAAGATGATTCTCTGCTGTACAGTTTTGGGGAATGTGACGAAGAAGGTGAAGATGAGCAAATTACACCAATTGATGAAGATCTTATAAAGGATTTGATGAACATTGACGAGAGAATCTCTTACGATCATGATTCTGTGGAAAAGGTGCTAGTTGATGATGGAAAACGTGATGCTTCTTTTTCTATTGATCATTTGAATAGGGATAGTTCTTCAAAAAGGGAGCTTATTAATGGTAAAGACTCAGTGGGACATGCTTTGTGCAGTGATAAGGATCCGAGAAAGGGACCTTTAATTGCTAATTCTCAAAATCACATTGCAAAACATATTAAGAAGGTCAATGAAAGTTATTTTGGGTCATACAGTTCATTTGGTATCCATCGAGAGATGTTAAGTGATAAGGTGAGAATGGATGCTTATGGTCAAGCAATTTTGAAGAATCCTTCCCTACTAAACGGGGCTGTGGTTATGGATGTTGGTTGTGGAACTGGAATCCTCAGCCTATTTTCGGCACAAGCTGGAGCTTCCAGGGTTATTGCTGTTGAGGCTAGTGCCAAGATGGCAGCAGTGGCATCTCAGGTTGCAAAGGATAACGGTCTTTGGTGGAATAAAAGCCAAAGTGGAATTGATGGTCTCCCGAAGCGAGTCATAGAAGTGGTTCATGGTATGGTTGAAGAGATTGATAAAACAGTTGAACTTCAACCTCATAGTGTTGATGTATTGCTAAGTGAATGGATGGGATATTGCTTACTGTATGAATCCATGCTTGGTTCAGTGCTTTATGCACGGGACCGGTGGTTGAAGCCTGGTGGTGCCATTCTTCCGGATACAGCAACTATTTTTGTTGCAGGATTTGGAAAAGGAGCAACAAGTCTTCCATTTTGGGATAATGTGTGTGGTTTTGACATGTCTTGCATTGGGAAGGAGCTTGTCATGGATGCTGCCCAAATTCCTATAGTTGATGTTCTGGACTCACAAGATTTAGTTACCAGTTCTGCGATTCTACAGTCTTTTGACTTGGCAACCATGAAGCCCAATGAAGTCGATTTCACTGCGACTGCTACATTGGAATTGAAACCAAGTGCTTCAGCAACATGGTGCTGGTGCTATGGTGTTGTCCTATGGTTTGAAACTGGTTTTACAAGGAGATTCTGCCGAGAAACACCAGCTGTGTTATCCACATCCCCTTATACCCCAAGAACGCATTGGTCACAAACAATCTTAACCTTTCGAGAACCTATTGCAATAGGGTTTGGAAAAGAACAGAGGGGTAAACTGGAAGCAATTGGCACTGAGGTGCATCCTGCTGTAAATATCGATTTACGCATCAGCATTGTCCGATCTACAGAGCATCGCAGCATTGACATTTCCTTAGAAGCTACTGGTGTTAGTCCTGATGGTCAGAAACGTAGTTGGCCTGCTCAACTTTTCAATCTGCAGTAG 1860 0.4242 MASIDKQKREEKEPYRMEEEEEDEDSEDEEAWDDWEGERESEFACLFCDSQYSSCSSLFDHCASLHHFDFHAIRAILKLDFYASFKLINFVRSQVSENKCWSCGLTCQCKRDLQNHLHDVVDFNEIKTLWNDDRYLIPFMQDDSLLYSFGECDEEGEDEQITPIDEDLIKDLMNIDERISYDHDSVEKVLVDDGKRDASFSIDHLNRDSSSKRELINGKDSVGHALCSDKDPRKGPLIANSQNHIAKHIKKVNESYFGSYSSFGIHREMLSDKVRMDAYGQAILKNPSLLNGAVVMDVGCGTGILSLFSAQAGASRVIAVEASAKMAAVASQVAKDNGLWWNKSQSGIDGLPKRVIEVVHGMVEEIDKTVELQPHSVDVLLSEWMGYCLLYESMLGSVLYARDRWLKPGGAILPDTATIFVAGFGKGATSLPFWDNVCGFDMSCIGKELVMDAAQIPIVDVLDSQDLVTSSAILQSFDLATMKPNEVDFTATATLELKPSASATWCWCYGVVLWFETGFTRRFCRETPAVLSTSPYTPRTHWSQTILTFREPIAIGFGKEQRGKLEAIGTEVHPAVNIDLRISIVRSTEHRSIDISLEATGVSPDGQKRSWPAQLFNLQ* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2057 619 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 21 618 IPR025799 GO:0016274|GO:0018216
Vra5g2057 619 SUPERFAMILY beta-beta-alpha zinc fingers 27 162 IPR036236 -
Vra5g2057 619 MobiDBLite consensus disorder prediction 1 15 - -
Vra5g2057 619 MobiDBLite consensus disorder prediction 1 33 - -
Vra5g2057 619 Pfam Methyltransferase domain 295 410 IPR041698 -
Vra5g2057 619 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 21 618 - -
Vra5g2057 619 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 259 565 IPR029063 -
Vra5g2057 619 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 253 587 IPR025799 GO:0016274|GO:0018216
Vra5g2057 619 MobiDBLite consensus disorder prediction 16 33 - -
Vra5g2057 619 Gene3D Vaccinia Virus protein VP39 245 414 IPR029063 -
Vra5g2057 619 CDD AdoMet_MTases 295 413 - -
Vra5g2057 619 Gene3D - 416 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2057 Vra-Chr5 26209270 26214681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2057 20 618 C2H2 Transcription Factor Family AT3G12270 55.112 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2057 K11436 - gmx:100781879 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2057 5 26209270 26214681 Vra5g2057 5 26209270 26214681 ECH