Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2053 ATGGATGAATGCTACTGTAAAGCATACCCACTAGTGTCGTCAGAATCTCGACTTTGGCCCAATGATCAACAACACTTCAGTGTAGATTTTCAGTACTCAAACATGCAGGTTTTGAATGGAAGCAAATTAGAAGAAGCCTTTGACAACGGTTTACTCCACAACTTTCAAAACATTCCGAAGAATGAAATGTTGAATGAAACAACCATCGTGTCCTGTCTTTCCGACGTGGGTGTGCCTCAAAATGCTCACGGTGTCGTGGTCGCAGAAGTGTTACGGTGTGCACGTGACATGATTGGTGACACAGCTCACACACATACACCTGTTCTTCGTATGCGTGTGGAAATCGCCATTGCTCGTGCAAACCAAGATGAAATAAGTGTCAGTGGAAACCAAGATGGAATAACTGTCACTGAAATAAGTGTCAATGAAATTAGTGTCAGTGGAAACCAAGATGGAATAAGTGTGAGTGTTATCGACAGCGTTAGCGATGATGATAATTTTGAGGAAGCTCAGGAATATGGTTTCGACGAAGACGATGAGGATTATGGATTAATGCCTGCTGACAAGGCATTTGTTGAAGGTTTGGAGGATGTTCAACAAAAGGGTTCGTGTGCCATTTGTTTCGAGGATTTTCTTTTTGGTGTTCGTATGCCTTGCTTGCATGCGTTTCACAAAAGCTGCATCAGTGAGTGGTTGCACATAGGCAATTCTTGCCCTTTGTGTCGCTTTTATTTTCCTACTCAGAGTGATTGA 753 0.4263 MDECYCKAYPLVSSESRLWPNDQQHFSVDFQYSNMQVLNGSKLEEAFDNGLLHNFQNIPKNEMLNETTIVSCLSDVGVPQNAHGVVVAEVLRCARDMIGDTAHTHTPVLRMRVEIAIARANQDEISVSGNQDGITVTEISVNEISVSGNQDGISVSVIDSVSDDDNFEEAQEYGFDEDDEDYGLMPADKAFVEGLEDVQQKGSCAICFEDFLFGVRMPCLHAFHKSCISEWLHIGNSCPLCRFYFPTQSD* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2053 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 53 247 - -
Vra5g2053 250 SUPERFAMILY RING/U-box 203 248 - -
Vra5g2053 250 SMART ring_2 204 241 IPR001841 -
Vra5g2053 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 250 IPR013083 -
Vra5g2053 250 Pfam Ring finger domain 203 242 IPR001841 -
Vra5g2053 250 PANTHER F6A14.12 PROTEIN-RELATED 53 247 - -
Vra5g2053 250 ProSiteProfiles Zinc finger RING-type profile. 204 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2053 Vra-Chr5 26153904 26154656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2053 175 247 C3H Transcription Factor Family AT5G15820 39.286 2.78e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2053 - - vra:106760540 505.368