Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2052 ATGGCTTTTGGCTTGCCAATGAAGTCCATGGAGCCAACTATCTGTGGAGACAAGTTAGGTAACCTCATAATGGAAGTAGCTAAAAACTTTGTTGTATATATTGGGATGGTGCTTGCCTGCAATGGTTTACATTTTCTACTAAAGCCTTATAAACAACCACGCATTACTTCAGACATAATTGTAGGACTGTTGGTGGGCAACATAGGGTTTGTACGTGAGCTGTTTGAGAAATTTAACTTGACGCTTGGATTCATCATTGATTTTGGAATGACATGTTACATGTTTACCCTGGGAATAGAGATGGATCCTCATGCACTATTTGCAAAACCAAATAGGTACACTAAAACTGCTTTAGCAGGAATCATATGCTCCTTCATTATGGGAGGTCTTGTAACCCCAATGTTCAGATATTTCCCAGATGAAAACAAGCTGCTGGAGTTCACCCTAGCCTTCTCCACAATGATTTCTAGCACGGACTCACCACTCTTGACCCGTTTAATAACCCATCTGAAAATAGGAAAATCAGATATTGGGAAGCTCATCATTGGAGCAGGGATGCACACAGATTTTGTGTGCTGTTTGATGCTTTCCATTGGCTACATAGTTGTGCCAATGCCAGCATATTGTCAAAATTTGCTAGGAAGGTTTGAGATTAAGAAGACTGTAAATGTAGTGTTTGCAGTGGTGGTGCAGGTAGGGTTTACGGCCATGGTGTCACCAATGCTCCTGAAATGGGTTAGCAATGAGAACCCTGAGGGTAGACCCATGAAAGGTCCACACTTGGTACTGTCCATTGCCTTCATGGTCTTAATGTGTGCCTCCACCACTATGTATAATTATAATCCAATTTTAAGTGCTTTTCTGGTAGGGCTTTGTGTTCCCAGGGAGGGTAGAGTTTCCAGATGGTTTATCACCAGAATCAACTACATGTTGACCACAATTTTCTTTCCCATCTTTTTCTTGTGGATGGGATATGAATCTAATTTCAGGCAGTTTGAACTACACCATCCTGCAACATGGGTAAGACTTAGTGTGGTTTTAGTAGTGGCAGTAGCTGGAAAAGTTGTTGGAGTAGTCGTCTATGGGGCCATGTCTGGCGTTCACTGGCCTGAATCGGTTGCAATAGGAATGCTCCTTGTCACTAAGGGCCATTTGCAGATCTACTTAGCTATGAAAGTGATAGGTTGTGGTGGTGTAACTACTAGCACAGGCATTGTGTTGGTACTTGGAACCTTTTTAACAGCTTTACCTGCATCAAGAATTGTAGCAAGCATCATTAGACGAGCAAAGAAAAGAGCACCTACTCATCGTTTGGCACTTCAAATGCTTGACCCCTCAAGTGAGCTTAGGATCCTGCTGTGTGTTCAAGGGCCTCAAAATGCTCCTGCTTCCATCAACTTGGTGGAGATCACAAAAGGGACTGCTGACACCGGCATTGTGGTGTATGTCACTGACATGATTGAACTCACTGCTGAATTATCAGACTCATTGGAGAGGGATGAAGCATTGCAGACAGCAACAGTGAAAGACAGGGCAGTCATGGAGAGGAGAGACCAAGTAACCAACTCATTCCAAGCCTATGTGGCAGACAATGATGATGGCATTACGCTTAAAAGAACCATGACACTCTCAACAATCACTAACATGCCACAAGACATTTTCATTTTAGCAGAGGACTTGATGATTGCCCTCATCATATTGCCTTTCCACAGGAGCCAACGTGAAGATAAAAGATTGGATAGTGGTAATCCAGGATTCAGATACATGAACCGAAAGGTTCTGAGAAGTGCCCCTTGTTCTGTTGGGATTCTAGTAGATAGAGGCCTTGGATCATTTGAAGGTATAACAAGATGTGAAGCAACAATAAATGTGGCAGTGATATTCATTGGTGGAAAAGATGATAGAGAAGCCCTTGCCTACGCTAGCCGTGTTGCGCAGCATTCACAAGTTAAGCTGACGGTTCTAAGATTCCTAGTAGATAACAGTGTGGAGTCTGCAGCATTGTACAGGATAATCTCTCCGGAGCAGGAGAAAGAGATGCAATTGGATGATGAATGCTTTACACATTTCTACGAAAGGCATGTGATTGGGGGTCGGATTTCCTACATGGAGAAACATTTTGCAAATGCTGCTGAGACATTCTCCACTCTGAGATCCTTTGAAGGGCAATACTCATTGGTGATTGTTGGAAGGGAAGGAGGAATGAACTCAGTTTTGACAAGGGGCATGAATGATTGGCAACAGTGCCCAGAATTGGGACCAATAGGGGATGTTCTTTCTGGAACAGACTTCTCAATGACAGTTTCTGTTTTGATCATCCAACAACATAGACTTAGAGGAGAAATAGATGGGTTGGATGAAGATTTCTCTATCATATAA 2379 0.4283 MAFGLPMKSMEPTICGDKLGNLIMEVAKNFVVYIGMVLACNGLHFLLKPYKQPRITSDIIVGLLVGNIGFVRELFEKFNLTLGFIIDFGMTCYMFTLGIEMDPHALFAKPNRYTKTALAGIICSFIMGGLVTPMFRYFPDENKLLEFTLAFSTMISSTDSPLLTRLITHLKIGKSDIGKLIIGAGMHTDFVCCLMLSIGYIVVPMPAYCQNLLGRFEIKKTVNVVFAVVVQVGFTAMVSPMLLKWVSNENPEGRPMKGPHLVLSIAFMVLMCASTTMYNYNPILSAFLVGLCVPREGRVSRWFITRINYMLTTIFFPIFFLWMGYESNFRQFELHHPATWVRLSVVLVVAVAGKVVGVVVYGAMSGVHWPESVAIGMLLVTKGHLQIYLAMKVIGCGGVTTSTGIVLVLGTFLTALPASRIVASIIRRAKKRAPTHRLALQMLDPSSELRILLCVQGPQNAPASINLVEITKGTADTGIVVYVTDMIELTAELSDSLERDEALQTATVKDRAVMERRDQVTNSFQAYVADNDDGITLKRTMTLSTITNMPQDIFILAEDLMIALIILPFHRSQREDKRLDSGNPGFRYMNRKVLRSAPCSVGILVDRGLGSFEGITRCEATINVAVIFIGGKDDREALAYASRVAQHSQVKLTVLRFLVDNSVESAALYRIISPEQEKEMQLDDECFTHFYERHVIGGRISYMEKHFANAAETFSTLRSFEGQYSLVIVGREGGMNSVLTRGMNDWQQCPELGPIGDVLSGTDFSMTVSVLIIQQHRLRGEIDGLDEDFSII* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2052 792 Pfam Sodium/hydrogen exchanger family 32 411 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra5g2052 792 Gene3D - 27 434 IPR038770 -
Vra5g2052 792 PANTHER CATION/H + ANTIPORTER 14 789 - -
Vra5g2052 792 PANTHER CATION/H+ EXCHANGER 3 14 789 - -
Vra5g2052 792 Gene3D - 449 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2052 Vra-Chr5 26149075 26152731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2052 14 792 Antiporter Super Family AT3G52080 46.173 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2052 - - var:108333294 1315.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0097 2 773075 777864 Vra5g2052 5 26149075 26152731 PCT