Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2035 ATGCTGTCTTCAAACGTTGTTCCATCATCCTCCCCTCTCACTTTCACCAAACCCAATCCCCATTTCTTCATCAATGCTTATGCCCATCTCAAACCAAATCTTCTCACAAGGTTTCAGACCCAACACAGAGCCACTCCTCTCCAAAGTTCCAAACTTTCTTTCACGCCAACATCTCAGATCCAACATTCAATCTCAAAGGTAAGATCTTTCAACGGATACCTTCTTCACCCTCTTCAGCCCTCGTCAAAACCCAGGCTTCAAATCGTTAAGGCTGCGTCTGAAACCAATCCTGGAGGAGAAAATGTTGACTCCATTGTCCCCAAATCCAAGAATCTCAAACTTGCTCTGGTGTTCGGGCTATGGTACTTCCAGAACATCGTGTTCAACATTTACAACAAGAAAGTGTTAAACATATTCCCTTTCCCATGGCTTCTTGCCTCTTTCCAGCTCTTGGTTGGGTCCATTTGGATGCTGGTGCTTTGGTCCTCTAAGCTCCAACCTTGTCCGAAAATCTCGAAACCCTTCATCGTTGCTCTCCTGGGACCTGCTTTGTTCCACACAATAGGCCACATTTCAGCTTGTGTGTCATTCTCCAAGGTGGCTGTGTCCTTCACCCATGTCATCAAATCTGCAGAACCGGTTTTCTCTGTCATATTTTCCTCTGTCCTTGGCGATAAGTACCCCATTCAGGTTTGGCTCTCCATTCTACCCATTGTGCTTGGTTGTTCTTTAGCTGCTGTTACCGAGGTGTCTTTCAATGTACAAGGATTGTGGGGTGCCCTCATTAGCAACGTTGGTTTTGTGTTGAGGAACATCTACTCTAAGAGAAGTTTGCAGAATTTCAAGGAAGTTGATGGCTTAAACTTGTATGGCTGGATTACCATTGTTTCATTCCTGTACCTATTTCCAGTGGCTATTTTTGTTGAAGGGTCTCAGTGGATCCCTGGATATTACAAGGCTATTGAAGCTATAGGAAAACCATCCACATTTTATTTCTGGGTGCTGTTGTCTGGGGTTTTCTACCATCTTTATAACCAATCATCATACCAAGCACTTGATGAAATTAGCCCATTGACTTTCTCTGTGGGAAACACAATGAAAAGAGTGGTGGTGATTGTGTCTACGGTTTTGGTGTTCAGGAATCCTGTTCGACCTCTTAATGCCCTTGGATCTGCCATTGCAATTCTTGGGACTTTCCTGTATTCACAGGCAACATCCAAAAAGAAAGAAAAGAAAATTGAAGGGGAAAAGAGTAGTTAG 1260 0.4373 MLSSNVVPSSSPLTFTKPNPHFFINAYAHLKPNLLTRFQTQHRATPLQSSKLSFTPTSQIQHSISKVRSFNGYLLHPLQPSSKPRLQIVKAASETNPGGENVDSIVPKSKNLKLALVFGLWYFQNIVFNIYNKKVLNIFPFPWLLASFQLLVGSIWMLVLWSSKLQPCPKISKPFIVALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVIFSSVLGDKYPIQVWLSILPIVLGCSLAAVTEVSFNVQGLWGALISNVGFVLRNIYSKRSLQNFKEVDGLNLYGWITIVSFLYLFPVAIFVEGSQWIPGYYKAIEAIGKPSTFYFWVLLSGVFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVSTVLVFRNPVRPLNALGSAIAILGTFLYSQATSKKKEKKIEGEKSS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2035 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 293 405 - -
Vra5g2035 419 Pfam Triose-phosphate Transporter family 112 402 IPR004853 -
Vra5g2035 419 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 112 412 IPR004696 GO:0016021|GO:0022857|GO:0055085
Vra5g2035 419 PANTHER SOLUTE CARRIER FAMILY 35 41 415 - -
Vra5g2035 419 PANTHER XYLULOSE 5-PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC 41 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2035 Vra-Chr5 25974444 25976092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2035 81 417 Antiporters AT5G17630 80.117 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2035 K15283 - gmx:100101869 710.679