Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2024 ATGAATGATGGTAGGCAAATGGAGGTGCAGTATGTAGATACTGGGTTTCCCTACACTGTTTCTGAAAGTTTCATGGATTTCTTCCAATGCCTCACCACGCACTTGCCTGTCAATTATGCTCACGCTGGCTCAGTGCTCGATCAGGAAAGTATCTACTGGTCAATGAACATGAACCCTTACAAGTTTGGATTGTCTGGCCCTGTAACTACATGCTATTATGGTTCTTACGAGATAAATGATCATTTTCCAAGATTTGAGATGGATAGGAGTGAGTGGGAATACCCTTCAACAATAGTCGTGGACGAACCTACTCCAACTGAGTCTTCATCTGGAAGAGATGGAGTCACAAGCATGCAGACCATCCCGGAAGAATGCAGTCCAAATCATCAAGAATCCAGTAGTAGCCAGGTCATGTGGCAAGACAACATTGATCCCGATAATATGACATATGAGGAACTACTGGACCTGGGTGAGGCAGTGGGAACTCATAATCGCGGTCTTTCCCAAGAACTTATTGATACACTTCCAACCTCAAAGTACAACTTTGGGAGCTTATTCAAAAGAAAAAATTCAGCTAAAAGGTGTGTGATTTGTCAGATGTCTTATAGAAGAGGTGACCAGCAAATAAAATTACCATGCAACCATGTTTACCACAGTGAATGCATAACAAGATGGCTTAACATTAGCAAGAAGTGCCCAGTTTGTAACATTGAGGTATTTGGTGAGGATTCATCTAATTAG 741 0.4197 MNDGRQMEVQYVDTGFPYTVSESFMDFFQCLTTHLPVNYAHAGSVLDQESIYWSMNMNPYKFGLSGPVTTCYYGSYEINDHFPRFEMDRSEWEYPSTIVVDEPTPTESSSGRDGVTSMQTIPEECSPNHQESSSSQVMWQDNIDPDNMTYEELLDLGEAVGTHNRGLSQELIDTLPTSKYNFGSLFKRKNSAKRCVICQMSYRRGDQQIKLPCNHVYHSECITRWLNISKKCPVCNIEVFGEDSSN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2024 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Vra5g2024 246 SMART ringv_2 194 236 IPR011016 GO:0008270
Vra5g2024 246 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Vra5g2024 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 245 - -
Vra5g2024 246 Pfam Ring finger domain 194 236 IPR001841 -
Vra5g2024 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 245 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vra5g2024 246 SMART ring_2 195 235 IPR001841 -
Vra5g2024 246 SUPERFAMILY RING/U-box 194 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2024 Vra-Chr5 25813446 25818319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2024 3 244 C3H Transcription Factor Family AT3G63530 53.689 3.45e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2024 K19045 - gmx:100785290 407.912