Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2020 ATGCTGCAATATATTTATACACAACTCTATAGCTACTGGCCAAAGATCAGAAAAACCATCTGTGCCTTCACTATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCGCTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCTTATCCTCTTTCATACTCAAACATAACTAACACCACCGATATTGTTCAATCAGAAACCTTCTCTTCATCTTGTGCAGCTCCTCCTTCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAGTCTCATAAAGCACAAGGAGAACGAACCCTCCAACGCTGCCTGCGAAGCTGAAGAGGAAGGGCACAAGAAAGGAGACATGGATGAGACCCTTTTGACTGAAGATGCTGATGATGAAACTGTGGCAGTAGCACTGCACATAGGTCTTCCTAGCGTGGATTCTTCTGATCTTCTGGGATCGGGGAAGATCTCAGCTTGTGCACAAATGGGTGAGAAAGGGGAAGTGAGTGTGGTTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTCATTGGCCCTACTCAGTTTTTATGCTCTGTGTGCTCCAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGTTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTACAAACACATTACAAGAGAAAACATGGTATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAGGGTGATTGGCGGACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGTCATGGAGCTGTTGATATTGATTGCATGCAGGAAGATGAAGCTACCTCCGAAATTGAACATGATGGAGATAGCTCAATGTGA 1092 0.435 MLQYIYTQLYSYWPKIRKTICAFTMTDPHSNLYAGTFNFMPLYSHRSSFTSQPNHFSSYPLSYSNITNTTDIVQSETFSSSCAAPPSPPLREALPLISLIKHKENEPSNAACEAEEEGHKKGDMDETLLTEDADDETVAVALHIGLPSVDSSDLLGSGKISACAQMGEKGEVSVVSGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEATSEIEHDGDSSM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2020 363 SMART c2h2final6 287 307 IPR013087 -
Vra5g2020 363 SMART c2h2final6 203 225 IPR013087 -
Vra5g2020 363 SMART c2h2final6 313 336 IPR013087 -
Vra5g2020 363 ProSitePatterns Zinc finger C2H2 type domain signature. 205 225 IPR013087 -
Vra5g2020 363 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 25 358 - -
Vra5g2020 363 Gene3D Classic Zinc Finger 202 225 - -
Vra5g2020 363 PANTHER ZINC FINGER PROTEIN WIP2 25 358 IPR043584 GO:0003700|GO:0010468
Vra5g2020 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 230 IPR013087 -
Vra5g2020 363 Gene3D Classic Zinc Finger 256 342 - -
Vra5g2020 363 SUPERFAMILY beta-beta-alpha zinc fingers 271 307 IPR036236 -
Vra5g2020 363 SUPERFAMILY beta-beta-alpha zinc fingers 196 225 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2020 Vra-Chr5 25770974 25773127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2020 63 356 C2H2 Transcription Factor Family AT1G51220 57.643 1.57e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g2020 zf-C2H2_6 2.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2020 - - gmx:100789060 567.385