Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2017 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAATGTGATTTTGTTCATGAGAGAAAGGATGGTATATGTACCTATTATCAAAAAGGAGTATGTGCTTATGGCAGTAGATGCAGATATAAACATGTCAAAGCTTATGAAGCGTCGTCTTCGTCTTCATCAAACGGACGTCATCCTCCTGTTTCAGATTCTGTGCTGAATCAAACCACCAAAGGGGCATCGAGTTGTGTTATAAAGGTTTCAAAGTCATCTTCATCAGACAAGTGTGCAAGGAGTTCACAACATAAGAATCTGGTCTCTTCTGGAAATGATGTTGGTCAATCCAGTTCTAGTGGTGCAACATCTGGACTTTTGTTTTGTTCATTTGCTGCTGCCAACTGCCCCCTTGGAAATAAATGTTCTCGTGTTCATGGAAATCGATGTTTTTACTGTAGAAAATTTTGCTTACATCCTACTGACAGTGAGGAAAGAGAAAATCATTTGGCAACTTGTGAGAAAAGGGAAAAATACCTTCAGGCTTTGAATGATAGTCAAGAAGTAGAATGCAATGTCTGTTTGGAGCGTGTTCTTTCCAAGCCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTCAATGTGACCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACATGAGTAATAACGGAACTGCTAATACAGTGAGAAAATGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAACTGCAAACAAATTGATTGCAAGCATTTTAACTTCGGAAACGGGAATTGTCCCTTTGGGGCTTGTTGTTTCTACAAGCACACTGTGAAGCCTGGCTCGTACACATGGATACATCACAGGCCACCACCACCACCACAGCGGAGACAAAACAATCTTAACATGAATGAGATGTTGGACATGCTCAGCGATGTTGATTTAACTAGTGCTGAATATCTTTCTATCATGAGGGACTCGGATCTTTTCGACGATATGGATCCATTTGGGATCATAGATATATCTGATAGGCTTGCTGGTGAATCAGATCTTTGTTTGGGCCCTTTTGATTCTGATGAAGAAGGGGTAGATTTTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGACGATTTTGGTCTTGAAGATTTTGATGATGAAGAGTTCAATCCTATGGAGGCTGCCTTGTTATCCATGATGATGCATTCTGACATAGATGAAGATGAAGAAGAATACAGTGATGAGTACTACTAG 1356 0.4056 MSNRVCKFYARGACLKGDQCDFVHERKDGICTYYQKGVCAYGSRCRYKHVKAYEASSSSSSNGRHPPVSDSVLNQTTKGASSCVIKVSKSSSSDKCARSSQHKNLVSSGNDVGQSSSSGATSGLLFCSFAAANCPLGNKCSRVHGNRCFYCRKFCLHPTDSEERENHLATCEKREKYLQALNDSQEVECNVCLERVLSKPKPSDCKFGLLPQCDHAFCLSCIRNWRNSAPTSGMDMSNNGTANTVRKCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKQIDCKHFNFGNGNCPFGACCFYKHTVKPGSYTWIHHRPPPPPQRRQNNLNMNEMLDMLSDVDLTSAEYLSIMRDSDLFDDMDPFGIIDISDRLAGESDLCLGPFDSDEEGVDFFQMAALSEALVSGVDDFGLEDFDDEEFNPMEAALLSMMMHSDIDEDEEEYSDEYY* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2017 451 PANTHER MAKORIN-RELATED 1 449 IPR045072 -
Vra5g2017 451 SUPERFAMILY CCCH zinc finger 25 49 IPR036855 GO:0046872
Vra5g2017 451 ProSiteProfiles Zinc finger C3H1-type profile. 281 310 IPR000571 GO:0046872
Vra5g2017 451 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Vra5g2017 451 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Vra5g2017 451 ProSiteProfiles Zinc finger RING-type profile. 189 252 IPR001841 -
Vra5g2017 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 257 IPR013083 -
Vra5g2017 451 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Vra5g2017 451 CDD RING-HC_MKRN 189 252 - -
Vra5g2017 451 Pfam CCCH-type zinc finger 30 49 IPR041367 -
Vra5g2017 451 Pfam Zinc finger, C3HC4 type (RING finger) 189 251 IPR018957 GO:0046872
Vra5g2017 451 Coils Coil 268 288 - -
Vra5g2017 451 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 449 - -
Vra5g2017 451 SMART ring_2 189 251 IPR001841 -
Vra5g2017 451 Gene3D - 28 104 - -
Vra5g2017 451 Gene3D - 1 27 - -
Vra5g2017 451 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Vra5g2017 451 SUPERFAMILY RING/U-box 180 258 - -
Vra5g2017 451 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Vra5g2017 451 SMART c3hfinal6 27 51 IPR000571 GO:0046872
Vra5g2017 451 SMART c3hfinal6 281 309 IPR000571 GO:0046872
Vra5g2017 451 SMART c3hfinal6 121 146 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2017 Vra-Chr5 25753823 25757961 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra5g2017 zf-C3HC4 1.4e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2017 K15687 - gmx:100788886 716.842