Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2006 ATGTATTCGTATGTCTTCAACATTCTCCGGTGTATCCTCCGGCGTTTCGTCCGGCGTGTCGAAGAACCGGACCGCATCATGTCCGGCATGTCCGAGGGTATGACCGTGTCTCACCCAACAGCCCCTATCGGAGGACCTTCAGTCGCGTCCGACGCCATCATCCATCACACCCCTTCTTCATCTCATGCATACGATGTATTTGTCAGCTTCCGTGGTGAAGACACGCGCAACAACTTCACTAGTTTTCTCTTTGGAGCTCTCTGTCGACAAGGCATTGTTGCATTCAAAGATGACGAATGTATCAAAAAAGGTGATTTCATAACACCCAAGCTGCTACAAGCCATTAAGGGCTCTCAAGTTTTCGTTGTTGTCTTATCAAAGAACTATGCTTCCTCCACTTGGTGCTTACGTGAACTGGTTGAGATATTTAATTGCTGTGAAACTTCAGCAAGACCCGTTATACCTATATTTTATGATGTTGAGCCTACTACGGTGCGCCACCAGAAAGGATGTTATGAGAAAGCATTTGCAGAACACGAAAATAGATTCAGAAAAGATAAGGTGAAGATGGAGGAAGTTCAAAGATGGAAAGAAGCTCTCAGAAAAGTGGCCGATATTTCTGGTTCGGAAATCGCAAATAAGCTACAAAATGAACAGATTGAAAAAATTGTTCAAGAGATAAAAAATCATTTGAGGCCAAAAATTTTAAATCTTCCAAGGGATGAACTAGTTGGGATAGAGGATCGAGCTCAAAACTTACGAAATATTTTGCGTTTCGACCTCCCTAATGATGTTCGAGTTGTCGGAATAAGTGGAATGAGTGGCATAGGAAAGACAACTCTTATTCGGGCTTTATATGAAAGAATTTGTCATCAATATAGTTATAGTTGTTTTATTGATAATGTAAACAAAATATTTGTAGATTCTGGTTCGATGGGCTTACAAAAGCAATTAATTTCTCAGACTCTAAATGAGAAAAATGTTGAGATTCGCAATCTTACCGAGGGAACATGTTTGGTGCAATCCAAACTCAACAATGCTAATGCACTTATAGTTTTTGACAACGTTGATCAAGTTGAACATCTGAACATATTTAGCGGAAATAGAGTCAATTTGTTGCGAGAATGTTTAGGTGGAGGGAGCAGAATCATCATAGTTTCTAGGGATGAACAAATATTGAAGATACATGGAGTTGATGATATTTATCAAGTTCAACCGTTGAATTGGGAAGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGATAATTATATTTTGAACGGTTATGAAAAGTTGTCATATGAGATACTATCACATGTTGATGGCCATCCCTTGGCAATTGAAACAATTGGGTCATCTTTGTTTGGCCGAAGTTTGTCACAATGGAAAAGTGTATTGGAAGCGTTAGAAGAAAATAAAAGTAAAAATATTATGGATATTTTGCGCATAAGTTATATTCAACTGGAAGAAAGATACCAACAAACATTTTTGGATATTGCTTGCTTCTTCAATTATCAAGATGAAGAAGAAGTGAAGGAAATTCTAAATTTTCGTGGATTTCATCCTGAAGATAGCATAGAAGTTCTCATTGATAAGTCACTCGTTATCAGAGATTTCGAAGGGTTCATATATATGCATAACTTGCTAGAGGATTTGGGCAGGTGTATTGTAAAGGAAGTATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACATGCAAAGATCTCCATGATGCTATGTCAGAGAACAAGGTAACTCAAAACCTTGAGGCAATATTTCTGACTAAGGATGATGTTGATGATGACGATGATGATGTTGTTGATGATGATGATGATGAAATCCGAGATGATGAAACAATCAAGGCGGATGGTCTATCAAAAATTAAACATCTGAAATTGTTTTATGTTCGGAATGTGAACGTGAAGTTTTCGGGAAGTCTGAGTCATCTTTCGAAAGAACTAGGATATCTTGTTTGGTACAGATATCCATTTGAGTGTTTGCCTCAAACTTTTCAGCCACACAAACTAGTTGAGTTAAACCTGTTTGGGAGCAGTATTCAACGACTGTGGGAAGGCACAAAGCGGTTACCCCATTTGAAGCGTTTGGATCTCTCTTATTGCACAAGTTTAATTGAGATGCCAAATGTATCAAAGGCCTTAAATCTTGAATGGATTATTCTTGAAGGATGCGTACAGCTCCAAGAACTCGATCCATCGATTTGGAGCCTGAGAAAGCTTGTTGATTTGAATTTGAGAGACTGCAAAAAACTAGTAATCTTATCCAATACTATATTGGGCCTGCATTCTCTTAAATATTTAGATTTCTCTGGTTGTTCAATAATAGATAGTAAAGATGAAACAAGGAACACAGAAGACTTGATCAGCAGTTTACCGCCCTCCTCTCCTCTCTCATGTTTGTGTGAACTCGATCTGAACTTCTGTAACTTAGTTCAAATTCATGATTACATTGGAAAGTTACGTTTCTTAGAGAGACTAAATTTAAAAGGAAACAATTTTGTTACATTGCCTAACCTCAAGGACCTTTCGAGATTGTATGTTTTAAACTTACAAGATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACTGTCCGTAACTCGAAACCTTTCATGCTGTCAAGATTACGATCTATAAAATTTTATTCGCCTCATTATTGGAATGAGGAAAATACAGGTTTTACCTTTCCAGGATTAATCATTTTTGGCTGCCCAAAGTTAGTTGAGATTGAACAGTGCATTAGAAAGAGTTTTTCCTGGACAATTCAAATTCTTAAGGCGACCTACCCATGGCCATTCCCTCAAAGTATTATACCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGGGGACATAGAATACCTGGACAAAGAATACCTAACCGTTGATCCACCTCCCGTTCCGCATTACAATAATTTCATTGGTGTTTTGTGTTGCGTAATATTTCGTCTATACAATAAACAAATTCCAATAGATTTTGGAAGAGATCACATGTGGTTACATTATGAAAAGGTTTATATGGACGAACGTGGTATTCATCCTTGTCGTTTGAGGGTGAGGTCGATTGGAGAAAGGTTGGGTTACGAGAATTCTGTTACGGTGGATGTGAAGAAATTTCAGTATTTCTGGGTAAATGAACAAGACCTAATTAACCTCAAAATGATGCATTGTGCAACTCGGAAGCGGAAGATTTCCGTAATTGAGGAAAACGGTTAG 3258 0.3809 MYSYVFNILRCILRRFVRRVEEPDRIMSGMSEGMTVSHPTAPIGGPSVASDAIIHHTPSSSHAYDVFVSFRGEDTRNNFTSFLFGALCRQGIVAFKDDECIKKGDFITPKLLQAIKGSQVFVVVLSKNYASSTWCLRELVEIFNCCETSARPVIPIFYDVEPTTVRHQKGCYEKAFAEHENRFRKDKVKMEEVQRWKEALRKVADISGSEIANKLQNEQIEKIVQEIKNHLRPKILNLPRDELVGIEDRAQNLRNILRFDLPNDVRVVGISGMSGIGKTTLIRALYERICHQYSYSCFIDNVNKIFVDSGSMGLQKQLISQTLNEKNVEIRNLTEGTCLVQSKLNNANALIVFDNVDQVEHLNIFSGNRVNLLRECLGGGSRIIIVSRDEQILKIHGVDDIYQVQPLNWEDAIQLFCRNAFKDNYILNGYEKLSYEILSHVDGHPLAIETIGSSLFGRSLSQWKSVLEALEENKSKNIMDILRISYIQLEERYQQTFLDIACFFNYQDEEEVKEILNFRGFHPEDSIEVLIDKSLVIRDFEGFIYMHNLLEDLGRCIVKEVSPKEPIKWSRLWTCKDLHDAMSENKVTQNLEAIFLTKDDVDDDDDDVVDDDDDEIRDDETIKADGLSKIKHLKLFYVRNVNVKFSGSLSHLSKELGYLVWYRYPFECLPQTFQPHKLVELNLFGSSIQRLWEGTKRLPHLKRLDLSYCTSLIEMPNVSKALNLEWIILEGCVQLQELDPSIWSLRKLVDLNLRDCKKLVILSNTILGLHSLKYLDFSGCSIIDSKDETRNTEDLISSLPPSSPLSCLCELDLNFCNLVQIHDYIGKLRFLERLNLKGNNFVTLPNLKDLSRLYVLNLQDCKRLKYLPDLPSRTVRNSKPFMLSRLRSIKFYSPHYWNEENTGFTFPGLIIFGCPKLVEIEQCIRKSFSWTIQILKATYPWPFPQSIIPGSQIPSLFNNEFVNGDIEYLDKEYLTVDPPPVPHYNNFIGVLCCVIFRLYNKQIPIDFGRDHMWLHYEKVYMDERGIHPCRLRVRSIGERLGYENSVTVDVKKFQYFWVNEQDLINLKMMHCATRKRKISVIEENG* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2006 1085 SUPERFAMILY L domain-like 546 869 - -
Vra5g2006 1085 Gene3D Ribonuclease Inhibitor 793 939 IPR032675 -
Vra5g2006 1085 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 61 787 - -
Vra5g2006 1085 ProSiteProfiles TIR domain profile. 62 231 IPR000157 GO:0007165
Vra5g2006 1085 Gene3D - 407 490 IPR042197 -
Vra5g2006 1085 SMART till_3 63 206 IPR000157 GO:0007165
Vra5g2006 1085 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 61 787 IPR044974 GO:0006952
Vra5g2006 1085 Gene3D Ribonuclease Inhibitor 578 792 IPR032675 -
Vra5g2006 1085 ProSiteProfiles Leucine-rich repeat profile. 830 851 IPR001611 GO:0005515
Vra5g2006 1085 Gene3D - 231 400 IPR027417 -
Vra5g2006 1085 Pfam NB-ARC domain 263 478 IPR002182 GO:0043531
Vra5g2006 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 500 IPR027417 -
Vra5g2006 1085 Gene3D - 57 230 IPR035897 -
Vra5g2006 1085 PRINTS Disease resistance protein signature 267 282 - -
Vra5g2006 1085 PRINTS Disease resistance protein signature 343 357 - -
Vra5g2006 1085 PRINTS Disease resistance protein signature 441 455 - -
Vra5g2006 1085 PRINTS Disease resistance protein signature 696 712 - -
Vra5g2006 1085 Pfam TIR domain 63 235 IPR000157 GO:0007165
Vra5g2006 1085 SUPERFAMILY Toll/Interleukin receptor TIR domain 56 208 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2006 Vra-Chr5 25619651 25624424 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2006 59 873 WRKY Transcription Factor Family AT4G12020 28.313 1.26e-73 266