Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2005 ATGGCAACAACCATTCCAAGATTTGTTGGATCCATCATCATGACCCTTTTCACCATGGGAAGTGCACAATCCCTGAACTATGTGAATGATGACTGCCACAACTCAACAACAAAAGAAAAAGCCCTAACCCTAACATTCAGAACCAACCTTAACACCACCCTCTCAAGGCTCTCTTCTGATGCTGCTACAAGCAAGGGTTTCAACAACACCACCACAGGAAATGGCAGCACACTGGCTGATGATGCTGTGTATGGCCTCTATGACTGTAGGGGTGATGTCACAGGACCCTTCTGCCAGTTCTGTGTCTCCACTGCAGCCTCAGATATTCTCCAGCAATGCCCTAACAGATCCTCTGCTGTGATATGGTACAACTACTGCATTCTCAGGTACTCAAACCAAAACTTCTTTGGGAACCTCACCACAACCCCATCATGGGAAATTGTGGAGAACTCCAAGAACACCACTGACCCACAAGAGATTCAGCAAGCTGAGAGCTACATGCAAAGCCTGAAGAGAGAAGCCACTGTGGAGACCAACAAGTTGTATGCAATGGGAGGGTTCAATCTGAGTGATGGTGGGGAAAGGTATGGGTTGGTGCAGTGCAGTAGGGACCTCACCAGTGATGAGTGCAGCCAGTGTTTGGAGGCCATGATTGAAAAACTTCCTCAGTGTTGTGCTGCAAAGAGAGCATGGCAGGTTTTGGCTCCAAGTTGCCTTATAAAGTATGATGATTTCATGTTCTACCAGATTACAGATCAAACTTCTTCTCCTTTGCCTAATTCAGCTAAGAAGGGAAGTTCAATTAGCTCAAAAACATTGATCATAATCATTGTGAGTGTATTGGTGGCACTAGTTTTTCTAAGTTGCTCTGTCTATTACTTGTGGAGAAAGTATTTGACAAATAAAGATGGATTGATGTCAGTGAACACCCCAAGATCTTTTCATGGCCATGTTCAAAGAGAAGAACCACTTAATGCAGACCTTCCAACAATCCCTTTAATCTGGATTCAACAGAGCACTAATTACTTTTCAGAGTTCTCTAAATTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTAGTTTGGAAGATGGAACAGAAGTTGCTGTCAAAAGACTCTCTAAAGCATCTAATCAAGGTTTGGAGGAGTTTAAGAATGAAGTGATCTTCATAGCCAAACTGCAACATAGGAACCTTGTGAGACTATTGGGATGCTGCATTGAAGAAAATGAAAAGCTGCTTGTGTACGAGTACATGCCAAATTCTAGCCTTGACTCTCACCTGTTCAATGATGAAAAAAGAAAGCAACTAGATTGGAAGTTAAGACTGAGCATTATCAATGGAATTGCAAAAGGACTTCTGTATCTACATGAAGACTCCAGACTTAGAATAATACACAGAGATCTAAAAGCCAGCAATGTACTTCTGGATCAAGAGATGAATCCGAAAATATCAGATTTTGGATTGGCAAGAACATTTGAAAAAGGACAGATTCAAGAAAATACACAGAGAGTTATGGGCACCTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTGTATTCAGTGAAATCTGATGTTTTCGCTTTTGGAGTTCTTCTACTAGAAATCATACGTGGGAAAAGGAACAGTGGATTCCATCTTTCAGAACATGGTCAAAGCCTTCTTGTACATAGTTGGAGACTTTGGTGTGAAGGAAAAAGCTTGGAAATGTTGGATCCAATGCTGGAAAAGACATACAAAGCCAGTGAAGTTATGAAATGCATACACATTGGTTTATTGTGTGTTCAAGAAGATGCAGCTGATAGACCAACCATGTCCACAGTTGTTGTCATGATGGCAAGTGACGCAATTGCCCTTCCCAACCCTAATCATCCTGCATTTTCAGTTGGAAGAAAGATGAAAGAAGAAGAATCAACATCAAAAGGATCCAAGGATCCTTCTGTTAATGATGTAACAATATCAAACATTTTACCAAGGTAG 1986 0.4154 MATTIPRFVGSIIMTLFTMGSAQSLNYVNDDCHNSTTKEKALTLTFRTNLNTTLSRLSSDAATSKGFNNTTTGNGSTLADDAVYGLYDCRGDVTGPFCQFCVSTAASDILQQCPNRSSAVIWYNYCILRYSNQNFFGNLTTTPSWEIVENSKNTTDPQEIQQAESYMQSLKREATVETNKLYAMGGFNLSDGGERYGLVQCSRDLTSDECSQCLEAMIEKLPQCCAAKRAWQVLAPSCLIKYDDFMFYQITDQTSSPLPNSAKKGSSISSKTLIIIIVSVLVALVFLSCSVYYLWRKYLTNKDGLMSVNTPRSFHGHVQREEPLNADLPTIPLIWIQQSTNYFSEFSKLGEGGFGPVYKGSLEDGTEVAVKRLSKASNQGLEEFKNEVIFIAKLQHRNLVRLLGCCIEENEKLLVYEYMPNSSLDSHLFNDEKRKQLDWKLRLSIINGIAKGLLYLHEDSRLRIIHRDLKASNVLLDQEMNPKISDFGLARTFEKGQIQENTQRVMGTYGYMAPEYAMEGLYSVKSDVFAFGVLLLEIIRGKRNSGFHLSEHGQSLLVHSWRLWCEGKSLEMLDPMLEKTYKASEVMKCIHIGLLCVQEDAADRPTMSTVVVMMASDAIALPNPNHPAFSVGRKMKEEESTSKGSKDPSVNDVTISNILPR* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2005 661 MobiDBLite consensus disorder prediction 646 661 - -
Vra5g2005 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vra5g2005 661 Gene3D Phosphorylase Kinase; domain 1 308 418 - -
Vra5g2005 661 Pfam Salt stress response/antifungal 32 133 IPR002902 -
Vra5g2005 661 Pfam Salt stress response/antifungal 160 243 IPR002902 -
Vra5g2005 661 ProSiteProfiles Gnk2-homologous domain profile. 26 135 IPR002902 -
Vra5g2005 661 Pfam Domain of unknown function (DUF3403) 616 661 IPR021820 GO:0004674
Vra5g2005 661 Gene3D Transferase(Phosphotransferase) domain 1 419 621 - -
Vra5g2005 661 Gene3D - 24 135 IPR038408 -
Vra5g2005 661 Gene3D - 144 247 IPR038408 -
Vra5g2005 661 SUPERFAMILY Protein kinase-like (PK-like) 328 629 IPR011009 -
Vra5g2005 661 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 658 - -
Vra5g2005 661 MobiDBLite consensus disorder prediction 631 645 - -
Vra5g2005 661 MobiDBLite consensus disorder prediction 629 661 - -
Vra5g2005 661 PANTHER PROTEIN KINASE DOMAIN 17 658 - -
Vra5g2005 661 SMART serkin_6 343 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2005 661 Pfam Protein tyrosine and serine/threonine kinase 347 612 IPR001245 GO:0004672|GO:0006468
Vra5g2005 661 ProSiteProfiles Gnk2-homologous domain profile. 142 247 IPR002902 -
Vra5g2005 661 ProSiteProfiles Protein kinase domain profile. 343 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2005 661 CDD STKc_IRAK 349 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2005 Vra-Chr5 25613637 25618948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2005 3 661 Receptor kinase-like Gene Family AT4G05200 42.090 4.31e-175 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g2005 PK_Tyr_Ser-Thr 9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2005 - - ahf:112718031 862.448