Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2004 ATGTATTCGTGTGTCTTCAACATTCTCCGGCGTATCTTCCGGTGTGTCGAAGAACCGGACCGTATCACGTCCGGCATGTCCGAGGGTATGACCATGTCTCACCCAACAGCCCCTATCGGACCTTCAATCGCGTCCGACGCCATCATCCATCACAACCCTTCTTCATCTAATAATGCATACGATGTATTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTCACTAGTTTTCTCTTTGGAGCTCTCCGTCGACAAGGCATTCTTGCTTTCAAAGATGACCAATGTATCAAAAAAGGTGATTTCATAGCACCCGAGCTTCTACAAGCCATTCAGGGTTCTCAAGTTTTCGTTGTTGTCTTATCAAAGAACTATGCTTCCTCCACTTGGTGCTTGCGTGAACTGGTAGAGATACTTAATTGCTGTCAAACTTCAGCAAGACCTCTTATACCTATATTTTATGATGTTGAGCCTACGACGGTGCGCAATCAGAAAGGATGTTATGAGAAAGCATTTGCAGAACACGAAAAAAGATCCAGAGAAGGTAAGGTGGAGATGGAGGAAGTTCAAAGATGGAAAGAAGCTCTCAGAAAAGTGGCCGATATCTCTGGTTCGGAAATCGGAAATAAGCCACAAAATGAAAAGATTGAAAAAATTGTTCAAGAGATAACAAATAATTTGAGACCAAAAATTTTAAATCTTCCAAGAGATGAACTAGTTGGGATAGAGACTCGAGTTCAAGACTTAGGAAATATATTGCGTTTCGACCTCCGTAATGATGTTCGAGTTGTGGGAATAAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGTTCGGGCTTTATATGAAAGAATTTGTCATCAATATAATTATCGTTGTTTTATTGATGATGTAAGCAAAATATTTCTAGATTCCCATTTGTTGGGCTTACAAAAGCAATTAATTTCTCAGACTCTAAATGAGAAAAATGTAGAGATTTGCAATGTTATCGAGGGAACATGTTTGGTGCAGTCCAAACTGAACAATGCTAAGGCACTTATAGTTTTTGACAACGTTGATGAAGTTCAACAACTGAGGATATTTAGCGGAAATAGAGACAATTTGTTGCGAGAATGCTTAGGTGGAGGGAGCAGAATCATCATAGTTTCTAGAGATGAACAAATATTGAAGATACATGGAGTTGATGATATTTATCAAGTTCAACCGTTGAACAGGGAAGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGTTAATTACATTTTGAGCGATTATGAAAAGTTGGCAGATGAGATACCATCACATGTTGAAGGGCATCCCTTGGCAATTGAAACAATTGGGTCATCTTTGTTTGGCCGAAGTTTGTCACAATGGGAAAGTGTACTGGAAGGGCTAAAAGAAAATAAAAGTAAAAATATTATGGATATTTTGCGCATAAGTTATATTCAACTGGAAGAAAAATATAAACAAACATTTTTGGATATTGCTTGCTTCTTCAATTCTTATGAGGAAGAACATCTGAAGGAAATTCTAAATTTTCGTGGATTTCATCCTGAAGATAGCATACAAGTTCTCATTGATAAATCACTCATTACCAGGAGTTTCGGTTGTTTCATACATATGCATAGCTTGCTAGTGGATTTGGGGAGGTGTATTGTTCGGGAAGTATCACCTAAAGAACCTATAAAGTGGAGTAGGTTGTGGACGCGCAAAGATCTCCATGATGCTATGTCAGAGAACGAGGCAACTCGAAACCTTGAGGCAATAGTTCTTAAACGGGGCAATGATGTTGGAATCCTAGATAAAACAATAAAGGCGGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTGATGTTGGGGACGTGAACGTGGAGTTTTCGGGAAGTCTGAGTCATCTTTCGAATGAACTAGGATATCTTATTTGGTACAGATATCCGTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTCAGTTAGACTTGCGTTGGAGCAGTATTCAACGACTGTGGGAAGGCACAAAGGATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACTGTCTTGCCCTCAGAACCTTTCACGCTTAGATTCCTATCTGCAATACTTAATACCAATCTTCCACCAATTCAACGTACAGGATTAATCATTTTCGGCTGTCCAGAATTAGTTGAGATTGAAGAGTGCATTAGAAAGAGTTTTTCATGGACAATTCAAATTATTGAGGTGTGGATGCTCTTTCCTTCTTCTTTTTGCTTTTTAATTATTCTTTTGTGTAGGAGAACAACTACTAACCAATAA 2322 0.3902 MYSCVFNILRRIFRCVEEPDRITSGMSEGMTMSHPTAPIGPSIASDAIIHHNPSSSNNAYDVFVSFRGEDTRNNFTSFLFGALRRQGILAFKDDQCIKKGDFIAPELLQAIQGSQVFVVVLSKNYASSTWCLRELVEILNCCQTSARPLIPIFYDVEPTTVRNQKGCYEKAFAEHEKRSREGKVEMEEVQRWKEALRKVADISGSEIGNKPQNEKIEKIVQEITNNLRPKILNLPRDELVGIETRVQDLGNILRFDLRNDVRVVGISGMGGIGKTTLVRALYERICHQYNYRCFIDDVSKIFLDSHLLGLQKQLISQTLNEKNVEICNVIEGTCLVQSKLNNAKALIVFDNVDEVQQLRIFSGNRDNLLRECLGGGSRIIIVSRDEQILKIHGVDDIYQVQPLNREDAIQLFCRNAFKVNYILSDYEKLADEIPSHVEGHPLAIETIGSSLFGRSLSQWESVLEGLKENKSKNIMDILRISYIQLEEKYKQTFLDIACFFNSYEEEHLKEILNFRGFHPEDSIQVLIDKSLITRSFGCFIHMHSLLVDLGRCIVREVSPKEPIKWSRLWTRKDLHDAMSENEATRNLEAIVLKRGNDVGILDKTIKADGLSKIKHLKLLDVGDVNVEFSGSLSHLSNELGYLIWYRYPFECLPQSFQPHKLVQLDLRWSSIQRLWEGTKDCKRLKYLPDLPSRTVLPSEPFTLRFLSAILNTNLPPIQRTGLIIFGCPELVEIEECIRKSFSWTIQIIEVWMLFPSSFCFLIILLCRRTTTNQ* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2004 773 ProSiteProfiles TIR domain profile. 58 231 IPR000157 GO:0007165
Vra5g2004 773 Gene3D - 402 486 IPR042197 -
Vra5g2004 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 496 IPR027417 -
Vra5g2004 773 SMART till_3 59 202 IPR000157 GO:0007165
Vra5g2004 773 Gene3D - 57 227 IPR035897 -
Vra5g2004 773 Gene3D Ribonuclease Inhibitor 575 746 IPR032675 -
Vra5g2004 773 SUPERFAMILY "Winged helix" DNA-binding domain 473 576 IPR036390 -
Vra5g2004 773 Pfam NB-ARC domain 258 474 IPR002182 GO:0043531
Vra5g2004 773 SUPERFAMILY Toll/Interleukin receptor TIR domain 50 204 IPR035897 -
Vra5g2004 773 Gene3D - 228 396 IPR027417 -
Vra5g2004 773 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 60 704 - -
Vra5g2004 773 PRINTS Disease resistance protein signature 263 278 - -
Vra5g2004 773 PRINTS Disease resistance protein signature 339 353 - -
Vra5g2004 773 PRINTS Disease resistance protein signature 437 451 - -
Vra5g2004 773 PRINTS Disease resistance protein signature 611 627 - -
Vra5g2004 773 Pfam TIR domain 59 233 IPR000157 GO:0007165
Vra5g2004 773 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 60 704 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2004 Vra-Chr5 25599686 25604048 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2004 260 687 WRKY Transcription Factor Family AT5G45050 32.215 2.08e-56 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2004 - - vra:106760531 1119.38