Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2001 ATGCCAGATGTAGCAGAGGCCCAAAATCTTGAATGGATAATTCTTTTAGGATGCGTACAGCTCCAAAAACTCAATCCATCGATTGGGAGTCTGAAAAAGCTTGTTCTTTTGAATTTGACATACTGCGAAAAACTAGTAATCTTATCCAATACTATATTGGGCCTGAATTCCCTTAAATATCTGTATGTCAGAGGTTGTTCAATAATAGGTAGTAATTGCTTACTAGATGAAACAAGGAACACAAAGCACTTGATCAGCTATTTGTCGCCCTCCTGTCCTCTCTCTTGTTTGTGTGAACTCAATCTAAGCTACTGTAACTTACTTCAAATTCCTGATTACATTGGAAAGTTACATTGTTTACAGAGCTTAAATTTAGAGGGAAACAATTTTGTTACATTACCTAACTTTAAGGACCTTTTGAGACTGTATTTTTTGAACTTACAGAATTGCAAGCGATTGAAATATTTGCCTGATCTCCCTTCACGAACTGTCTTGCCCTCAGAACCTTTCACATCGAGATTCCCATCTTCAATATTGAAGTCCCATCTTACAAGTCTTAAATTTACAGGATTAATGATTTTCGGCTGCCCAGAATTAGTTGAGATTGAACAGCTTACTACAAAGAGTTTTTCCTGGACAATTCAAATTATTGAGGCGACCTACCAATTGCCATTCCCTGAAACTTATATGCCTGATAGTATTATGCCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGGAGACATAGAAAACCTCGAAGAATACCTGGGCGAAGAATACCTAACCGTTGATCCACCTCCCGTTCCACATGACAATAATTTCATTGGTGTTTTGTGTTGCATAATATTTTGTCTATACAATATTGAACAAATTCCAATGAATTTTGGAAGAGATCACATGTGGTTACATTATGAAGAGCTTAATATGGACCGAAGTCGTATTTATCCTTGTGTGACGCGGATTATCGAATTGTTGGGTACTTATTCTAGTACGGTGTATGTGAAGAAATTTCAGTATCGCTGGGTAAATGAGCAAGACCTAATTAATCTCAAAATGACGCATTGTGCAAATTTGACAGCTGGTAAGCGCAAGATTTCCGTAATTGAGGAAAACGGATAG 1131 0.3731 MPDVAEAQNLEWIILLGCVQLQKLNPSIGSLKKLVLLNLTYCEKLVILSNTILGLNSLKYLYVRGCSIIGSNCLLDETRNTKHLISYLSPSCPLSCLCELNLSYCNLLQIPDYIGKLHCLQSLNLEGNNFVTLPNFKDLLRLYFLNLQNCKRLKYLPDLPSRTVLPSEPFTSRFPSSILKSHLTSLKFTGLMIFGCPELVEIEQLTTKSFSWTIQIIEATYQLPFPETYMPDSIMPGSQIPSLFNNEFVNGDIENLEEYLGEEYLTVDPPPVPHDNNFIGVLCCIIFCLYNIEQIPMNFGRDHMWLHYEELNMDRSRIYPCVTRIIELLGTYSSTVYVKKFQYRWVNEQDLINLKMTHCANLTAGKRKISVIEENG* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2001 376 Gene3D Ribonuclease Inhibitor 1 82 IPR032675 -
Vra5g2001 376 Gene3D Ribonuclease Inhibitor 83 216 IPR032675 -
Vra5g2001 376 PANTHER TMV RESISTANCE PROTEIN N-LIKE 2 75 - -
Vra5g2001 376 PANTHER TMV RESISTANCE PROTEIN N-LIKE 95 184 - -
Vra5g2001 376 SUPERFAMILY L domain-like 4 207 - -
Vra5g2001 376 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 75 IPR044974 GO:0006952
Vra5g2001 376 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 95 184 IPR044974 GO:0006952
Vra5g2001 376 ProSiteProfiles Leucine-rich repeat profile. 119 140 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2001 Vra-Chr5 25585206 25587159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2001 1 168 WRKY Transcription Factor Family AT4G12020 30.693 2.61e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2001 - - vra:106760528 751.51