Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2000 ATGTCGGAGAGAAATGTTAATAAGAGAAAGGGGATCATCATTGGTGTTTCAACCTTGTTCTTGGCGGCTGTAGTTGGGGCTGTCGTATTTGGTATCAATCTCAATGAGAGTGGTTCAAATGAAAATAATGTTAATAATAAAAAGGAACATGTTGCTGCTTCTGTAAAAGCCGTCGAAAGCCTTTGTAATCCCACGAATTACAAGGAAGAATGTGAGGAAAATCTCATGGCAGGTCTCGGAGACACTACAACAACAAGTCCATTTGATCTTATCAAACTTGCTTTCAATATCACCATGGAAAAAATTACTGACAAATTCGAAGAAATGAATATCTTGCATGACATTGAGAAGGAGCCAAGAGCCAAGATGGCACTCGAAACATGCAAACAACTCATGAATCTTTCAGTTTCAGAGTTAGAAAGGTCATTTATTGGAATGAGCGAGTTTAACCTGATGAATGTTGATAAAATCTTCATGAACTTAAAAGTTTGGCTGAGTGGTGCACTTACATACCAAGACACTTGCTTGGATGAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAGGATTTATTAACGACAGGCATGCATATGACTAGCAATGCTCTTTCCATCATAACAGCATTGTCTGATACTTTCACAAATTTGAATGCCACAAAATTATCGGGACGAGACCTCCTTCAAGATTCTGAGTCACACTCATCGGTTGATCACGGAGTGTTAAATGAAACTCTGATACTAAATCGCAAGCCTAATGTGACGGTAGCCAAAGATGGNAGTGGAGATTTCAAAACCATCAATGAAGCACTGAACAAAGTGCCCAAGAAAAATAAAACGCCATTTGTGATCTACATCAAGGAGGGCATCTACGAAGAGTATGTTGAAGTGAAAAAGAATATGACTCATGTTGTTTTCATTGGTGATGGTGGCAAAAAGACAAGAATAACAGGCAACAAAAACTACATAGATGGAATCACCACTTATAAAACTGCCACAGTTGCTATTCAAGGAGATAACTTTGTGGGCATGAACATGGGATTTGAGAACTCTGCTGGAGCCGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTTCAACTGTTCAATGGATGGGTATCAAGACACACTTTATGTACACACCCTGCGTCAGTATTATAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTCGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTCGTGGTTCGAAAGCCAATGAAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAAAAAGAAGANCCATCTGCAATAGTGATCCAAGGAGGTTNCATTGTGGCTGACCCTGAGTTTTACCCAGTAAGATTTGTTAACAAAGCTTACCTAGCTCGTCCATGGAAGACATACTCCAGGACCATTTTCATGGATACGTACATCGATGATTTGATTCAAGGTGAAGGATATTTGCCATGGCAAGCATTAGAGGGACCTACTGGTATGGATACTTGCTTTTATGCGGAGTATCACAACACTGGTCCTGGTTCAGATAAATCCAAACGTGTGAATTGGAATGGGATTTTGAACCTCAATTCGAAACTTATTGGAATACTGAAGGTACAACAGATCCTTCACCGTAAAGCAACAAGTAGGAACATCGTTTGCAGATAG 1689 0.4014 MSERNVNKRKGIIIGVSTLFLAAVVGAVVFGINLNESGSNENNVNNKKEHVAASVKAVESLCNPTNYKEECEENLMAGLGDTTTTSPFDLIKLAFNITMEKITDKFEEMNILHDIEKEPRAKMALETCKQLMNLSVSELERSFIGMSEFNLMNVDKIFMNLKVWLSGALTYQDTCLDEFENTTSDAGKKMQDLLTTGMHMTSNALSIITALSDTFTNLNATKLSGRDLLQDSESHSSVDHGVLNETLILNRKPNVTVAKDGSGDFKTINEALNKVPKKNKTPFVIYIKEGIYEEYVEVKKNMTHVVFIGDGGKKTRITGNKNYIDGITTYKTATVAIQGDNFVGMNMGFENSAGAEKHQAVALRVQADKSVFFNCSMDGYQDTLYVHTLRQYYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMKNQQCIVTAQGRKEKEXPSAIVIQGGXIVADPEFYPVRFVNKAYLARPWKTYSRTIFMDTYIDDLIQGEGYLPWQALEGPTGMDTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKLIGILKVQQILHRKATSRNIVCR* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2000 562 PANTHER PECTINESTERASE 10 542 - -
Vra5g2000 562 CDD PMEI-like_3 60 212 - -
Vra5g2000 562 Pfam Plant invertase/pectin methylesterase inhibitor 57 207 IPR006501 GO:0004857
Vra5g2000 562 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vra5g2000 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 212 IPR035513 -
Vra5g2000 562 SUPERFAMILY Pectin lyase-like 252 536 IPR011050 -
Vra5g2000 562 PANTHER PECTINESTERASE 10 542 - -
Vra5g2000 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 211 IPR006501 GO:0004857
Vra5g2000 562 SMART PMEI_2 53 207 IPR006501 GO:0004857
Vra5g2000 562 Gene3D - 249 556 IPR012334 -
Vra5g2000 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 212 IPR035513 -
Vra5g2000 562 Pfam Pectinesterase 254 536 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2000 Vra-Chr5 25537264 25542687 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2000 8 541 Carbohydrate Esterase AT3G05610 47.455 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2000 K01051 - gmx:100815272 796.578