Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1998 ATGTCGGAGAGAAATGTGGATAGGAGAAAGAGGATCATCATTGGTGTTTCAACCTTGTTCTTGGCGGCTGTAGTTGGGGCTGTCGTATTTGGTATCAATCTCAATGAGAGTGGTTCAAATGGAAATAATGTTAATAACAAAAAGGAACATGTTGCTGCTTCTGTAAAAGCCGTCCAAAGCCTTTGTAATCCCACGATTTACAAGGAAGAATGTGAGGAAAATCTCATGGCAGGTGTCGGAGACAGTACAACAACAAGTCCATTTGATCTTATCAAACTTGCTTTCAATATCACCATGGAAAAAATTACTGACAAATTCGAAGAAATGGATATCTTGCATGACATTGAGAAGGAGCCTAGAGCCAAGATGGCACTCGAAACATGCAAACAACTCATGAATCTTTCAGTTTCAGAGTTAGAAAGGTCATTTATTGGAATGAGCGAGTTTAACCTGATGAATGTTGATAAAATCTTCATGAACTTAAAAGTTTGGCTGAGTGGTGCACTTACATACCAAGACACTTGCTTGGATGAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAGGATTTATTAACGACAGGCATGCATATGACTAGCAATGCTCTTTCCATCATAACAGCATTGTCTGATACTTTCACAAATTTGAATGCCACAAAATTATCGGGACGAGACCTCCTTCAAGATTCTGAGTCACACTCATCGGTTGATCACGGAGTGTTAAATGAAACTTTGATACTAAATCGCAAGCCTAATGTGACGGTAGCCAAAGATGGTAGTGGAGATTTCAAAACCATCAATGAAGCACTGAACAAAGTGCCCAAGAAAAATAAAACGCCATTTGTGATCTACATCAAGGAGGGCATCTACGAAGAGTATGTTGAAGTGAAAAAGAATATGACTCATGTTGTTTTCATTGGTGATGGTGGCAAAAAGACAAGAATAACAGGCAACAAAAACTACATAGATGGAATCACCACTTATAAAACTGCCACAGTTGCTATTCAAGGAGATAACTTTGTGGGCATGAACATGGGATTTGAGAACTCTGCTGGAGCCGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTTCAACTGTTCAATGGATGGGTATCAAGACACACTTTATGTACACACCCTGCGTCAGTATTATAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTCGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTCGTGGTTCGAAAGCCAATGAAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAAAAAGAAGAACCATCTGCAATAGTGATCCAAGGAGGTTACATTGTGGCTGACCCTGAGTTTTACCCAGTAAGATTTGTTAACAAAGCTTACCTAGCTCGTCCATGGAAGACATACTCCAGGACCATTTTCATGGATACGTACATCGATGATTTGATTCAAGGTGAAGGATATTTGCCATGGCAAGCATTAGAGGGACCTACTGGTATGGATACTTGCTTTTATGCGGAGTATCACAACACTGGTCCTGGTTCAGATAAATCCAAACGTGTGAATTGGAATGGGATTTTGAACCTCAATTCGAAAGCTGCACGTTTGTTCTCACCTTCCAAGTTCTTTCATGGACTTGATTGGGTTCGGGCTACTGGGGTTCCTTGCTTCCATGGCGTGCCCCCACACTACAGGCACAAGAACACCACATTACCCTGGTGA 1743 0.4131 MSERNVDRRKRIIIGVSTLFLAAVVGAVVFGINLNESGSNGNNVNNKKEHVAASVKAVQSLCNPTIYKEECEENLMAGVGDSTTTSPFDLIKLAFNITMEKITDKFEEMDILHDIEKEPRAKMALETCKQLMNLSVSELERSFIGMSEFNLMNVDKIFMNLKVWLSGALTYQDTCLDEFENTTSDAGKKMQDLLTTGMHMTSNALSIITALSDTFTNLNATKLSGRDLLQDSESHSSVDHGVLNETLILNRKPNVTVAKDGSGDFKTINEALNKVPKKNKTPFVIYIKEGIYEEYVEVKKNMTHVVFIGDGGKKTRITGNKNYIDGITTYKTATVAIQGDNFVGMNMGFENSAGAEKHQAVALRVQADKSVFFNCSMDGYQDTLYVHTLRQYYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMKNQQCIVTAQGRKEKEEPSAIVIQGGYIVADPEFYPVRFVNKAYLARPWKTYSRTIFMDTYIDDLIQGEGYLPWQALEGPTGMDTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKAARLFSPSKFFHGLDWVRATGVPCFHGVPPHYRHKNTTLPW* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1998 580 SMART PMEI_2 53 207 IPR006501 GO:0004857
Vra5g1998 580 CDD PMEI-like_3 60 212 - -
Vra5g1998 580 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vra5g1998 580 PANTHER PECTINESTERASE 10 567 - -
Vra5g1998 580 SUPERFAMILY Pectin lyase-like 252 564 IPR011050 -
Vra5g1998 580 Gene3D - 249 567 IPR012334 -
Vra5g1998 580 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 211 IPR006501 GO:0004857
Vra5g1998 580 Pfam Plant invertase/pectin methylesterase inhibitor 57 207 IPR006501 GO:0004857
Vra5g1998 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 212 IPR035513 -
Vra5g1998 580 PANTHER PECTINESTERASE 10 567 - -
Vra5g1998 580 Pfam Pectinesterase 254 552 IPR000070 GO:0030599|GO:0042545
Vra5g1998 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 212 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1998 Vra-Chr5 25525564 25527993 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1998 8 579 Carbohydrate Esterase AT3G05610 46.259 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1998 K01051 - gmx:100803527 862.833