Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1997 ATGCAAGAGTTTCAGAAGCAGAAAGTCGGTGCTGAATTCATCGGGACCTTCGTTCTTATGTTTGCAGCCACTGCCGCCGCCATTGTTAACGAGAAGACAAACGGCTCTGAGACTATCATAGGCTGTGCTGCCACCACTGGCCTCGTCGTTATGGTCGTCATCTTTGCTACTGGACACATCTCCGGTGCTCACTTCAATCCTGCTGTCACTCTTTCCTTTGCTGCATTGAAACACTTTCCTTGGAAACATGTGCCTATATATATTGGTGCACAAGTTTTAGCATCTATCTGTGCCGCATTTGCTCTGAAATGGGTTTATCACCCTTTCATGATTGGTGGAGTCACTGTTCCTTCAGGAGGATATGGCCAATCTTTTGTTTTGGAATTCGTTATTGCTTTTAACCTCATGTTTGTTGTTACTGCAGTAACCACTGACACTAGAGCTGTGGGAGAACTTGCAGGAATAGCGGTGGGAGCTACGGTGATGTTCAATATAATGATAGCAGGACCAATATCAGGAGCCTCGATGAATCCAGTAAGAACACTAGGTCCTGCAATAGCCACAAAGAACTACAAAGCAATATGGGTTTATCTGATAGCTCCCATATTTGGAGCTTTAGCTGGTGCAGGTACCTATAGTGCAGTGAAGCTGCCCAAAGAAGATGATGCCAAAGAAAAAACTTCAATCAGCTTTAGAAAGTGA 702 0.4459 MQEFQKQKVGAEFIGTFVLMFAATAAAIVNEKTNGSETIIGCAATTGLVVMVVIFATGHISGAHFNPAVTLSFAALKHFPWKHVPIYIGAQVLASICAAFALKWVYHPFMIGGVTVPSGGYGQSFVLEFVIAFNLMFVVTAVTTDTRAVGELAGIAVGATVMFNIMIAGPISGASMNPVRTLGPAIATKNYKAIWVYLIAPIFGALAGAGTYSAVKLPKEDDAKEKTSISFRK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1997 233 Gene3D Glycerol uptake facilitator protein. 2 228 IPR023271 -
Vra5g1997 233 ProSitePatterns MIP family signature. 64 72 IPR022357 -
Vra5g1997 233 PANTHER BNAA02G36290D PROTEIN 7 226 - -
Vra5g1997 233 Pfam Major intrinsic protein 6 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1997 233 PRINTS Major intrinsic protein family signature 7 26 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1997 233 PRINTS Major intrinsic protein family signature 46 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1997 233 PRINTS Major intrinsic protein family signature 83 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1997 233 PRINTS Major intrinsic protein family signature 127 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1997 233 PRINTS Major intrinsic protein family signature 158 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1997 233 PRINTS Major intrinsic protein family signature 195 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1997 233 PANTHER AQUAPORIN NIP2-1 7 226 IPR034294 -
Vra5g1997 233 SUPERFAMILY Aquaporin-like 7 221 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1997 Vra-Chr5 25510854 25515426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1997 7 233 Major Intrinsic Protein MIP AT1G80760 73.568 5.86e-121 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1997 K09874 - gmx:100815637 388.652