Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1985 ATGGCCGTTGCAACCCTTTCTCTGCTTCCTCCCTCCACGTGTCCCTGCTTCTGCGGCACCGTCCATCTCCGCTCTCACAACAGCTTCATTTCCATTCATTCTCCTTCTTTTTCAACTTCCTTCTCCTCGGTTTCCAATCCCAACCTCGCTCCCACGCGCCGCCGCTTCCATACTGTTTTCGCCGCTTCCTCCGACTACTATTCCACTCTCGGAATCTCCAAATCCGCCACAGGAAAGGAAATCAAAGCTGCTTATCGAAAGTTAGCTCGTCAGTATCATCCTGATGTAAATAAGGAGCCCGGTGCGACTGAAAAGTTCAAAGAGATTAGTGCTGCGTATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATATGATCAATATGGCGAGGCAGGAGTTAAGAGTGCAGTTGGAGGAGGCTCAAGTGCCTATACGACAAATCCTTTTGATTTATTTGAGACATTTTTTGGGCCAAGTATGGGTGGTTTTGGTGGCATGGATCCAACTGGATTTGGAACTCGTCGTCGTAGTACCGTTACTAAGGGTGAAGACATTCGGTATGATTTTTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTTGATCTTTCTCATTTGGAAACATGTGAAGTCTGCACTGGTACTGGAGCAAAAATAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGGATGTTCTCACAGGTTTCAGTTTGTCCAAGCTGTGGAGGGGATGGAGAAGTCATATCTGAATATTGTCGTAAATGCAATGGTGAAGGACGAATACGGATTAAGAAAAATATTAAAGTTAAAGTTCCTCCCGGTGTTAGCTCAGGCAGTATTTTAAGAGTTTCTGGGGAGGGTGATGCTGGACCAAGAGGGGGCCCTCCTGGAGATCTTTATGTCTATCTTGACGTGCAAGAGATACCTGGAATTCAAAGGGATGACATTAATCTCTCCTCAACAATATCAATCAGTTATCTAGATGCAATACTGGGGGCTGTTGTGAAGGTAAAAACAGTTGAAGGCATTTCGGAACTACAAATACCCGCTGGTACCCAACCCGGAGATGTCCTCGTCCTTGCAAGAAAAGGTGTACCAAAATTAAATAAACCATCAATACGTGGTGATCACTTATTCACTGTTAAGGTTACCATACCAAAACGTATTAGTACAAAGGAACGTGAGTTGCTTGAAGAACTTGGTTCTCTAGGTGACGCAAGCAAACGTTTAAAATCTCGGCCTAAGACCCACTCTTCATCAAGTGTTACGGAAACTCCTACACTTCAAAAGGATGAAAGTCCAACAATAACATCAGAAGAAAAAAGTGAGAAATCAGAAGACGAAAACGATGTATGGAATAAATTGAAGGACTTTGCTGGATCTGTGGCAAATGGAGCTTTCAAGTGGCTGAAAGATAATCTCTAG 1476 0.439 MAVATLSLLPPSTCPCFCGTVHLRSHNSFISIHSPSFSTSFSSVSNPNLAPTRRRFHTVFAASSDYYSTLGISKSATGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFDLSHLETCEVCTGTGAKIGSKMRVCSTCGGRGQVMRTEQTPFGMFSQVSVCPSCGGDGEVISEYCRKCNGEGRIRIKKNIKVKVPPGVSSGSILRVSGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLSSTISISYLDAILGAVVKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELGSLGDASKRLKSRPKTHSSSSVTETPTLQKDESPTITSEEKSEKSEDENDVWNKLKDFAGSVANGAFKWLKDNL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1985 491 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 414 IPR008971 GO:0006457|GO:0051082
Vra5g1985 491 MobiDBLite consensus disorder prediction 451 468 - -
Vra5g1985 491 CDD DnaJ_zf 212 276 IPR001305 GO:0031072|GO:0051082
Vra5g1985 491 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Vra5g1985 491 Pfam DnaJ domain 65 126 IPR001623 -
Vra5g1985 491 Gene3D - 328 419 - -
Vra5g1985 491 Hamap Chaperone protein DnaJ [dnaJ]. 62 475 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vra5g1985 491 ProSiteProfiles Zinc finger CR-type profile. 199 281 IPR001305 GO:0031072|GO:0051082
Vra5g1985 491 TIGRFAM DnaJ_bact: chaperone protein DnaJ 65 418 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vra5g1985 491 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 53 429 - -
Vra5g1985 491 MobiDBLite consensus disorder prediction 433 450 - -
Vra5g1985 491 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 53 429 - -
Vra5g1985 491 Gene3D - 182 318 - -
Vra5g1985 491 Gene3D DnaJ domain 62 166 IPR036869 -
Vra5g1985 491 Pfam DnaJ central domain 212 276 IPR001305 GO:0031072|GO:0051082
Vra5g1985 491 CDD DnaJ_C 183 406 - -
Vra5g1985 491 MobiDBLite consensus disorder prediction 424 468 - -
Vra5g1985 491 SUPERFAMILY Chaperone J-domain 61 171 IPR036869 -
Vra5g1985 491 PRINTS DnaJ domain signature 67 85 IPR001623 -
Vra5g1985 491 PRINTS DnaJ domain signature 85 100 IPR001623 -
Vra5g1985 491 PRINTS DnaJ domain signature 101 121 IPR001623 -
Vra5g1985 491 PRINTS DnaJ domain signature 121 140 IPR001623 -
Vra5g1985 491 SUPERFAMILY HSP40/DnaJ peptide-binding domain 180 333 IPR008971 GO:0006457|GO:0051082
Vra5g1985 491 SMART dnaj_3 64 121 IPR001623 -
Vra5g1985 491 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 199 279 IPR036410 -
Vra5g1985 491 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
Vra5g1985 491 Pfam DnaJ C terminal domain 185 403 IPR002939 -
Vra5g1985 491 CDD DnaJ 65 118 IPR001623 -
Vra5g1985 491 Gene3D - 212 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1985 Vra-Chr5 25449446 25456645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1985 66 172 C2H2 Transcription Factor Family AT1G74250 38.596 7.38e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1985 K03686 - gmx:100798567 823.928