Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1982 ATGGCTTTTTGCCCAATCTTTTGTTGTGGAAATGGTTCGGATCGCAAAGGAAGAGGGAAGAAGCAGCCTCCATGGCGGGTGTTTTCTTTGAAAGAATTGCACTCAGCTACAAATAATTTCAACTATGACAACAAGCTAGGAGAAGGGGGATTTGGCAGTGTGTACTGGGGCCAGCTTTGGGATGGATCGCAAATTGNAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCTAGAGTCCGTCACAAGAATCTTCTCAGTCTACGTGGCTATTGTGCTNAAGGTCAGGAACGGTTAATTGTATATGATTATATGCCGAATTTGAGCTTGCTCTCTCATCTTCATGGACANCACTCAGCAGAATCCCTTCTTGATTGGAGCCGGCGGATGAACATCGCAATTGGGTCTGCTGAGGGAATTGCATATCTTCACCACCAGTCTACACCACACATCATCCACAGAGATATCAAGGCAAGCAATGTGTTGTTGGATTCAGATTTCCAGGCACGGGTTGCTGATTTTGGTTTTGCGAAGTTGATCCCTGATGGGGCAACACATGTGACTACAAGAGTTAAGGGCACCCTAGGGTACCTTGCACCCGAATATGCTATGCTAGGTAAAGCAAACGAGAGTTGTGATGTCTACAGTTTTGGAATTCTTCTTCTAGAACTGGCTAGTGGCAAAAAACCACTTGAAAAACTTAGTTCTACAGTTAAGAGATCGATAAATGATTGGGCACTGCCATTGGCTTGTGAAAAGAAGTTTAGTGAACTAGCAGATCCAAAGCTGGAGGGTAACTATGTGGAGGAAGAGCTTAAAAGAGTTGTTTTAATTGCTCTATTGTGTGCTCAGAGTCAGCCAGAGAAGAGGCCCACCATACTTGAGGTGGTAGAACTACTGAAGGGAGAATCCAAAGATAAGTTAATTCAGCTGGAAAATAATGAAATCTTTAAAAGCCCTCCAGTTGTAGGACATACTGATGATGAGACATTTACAGCTGAAGGAAGTTCCGATTTCATCTCAGAAGAGAAAGAATCAAAACCTGAGTTGGAAGAGAAAACTGGGCCATGA 1104 0.4303 MAFCPIFCCGNGSDRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIXVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAXGQERLIVYDYMPNLSLLSHLHGXHSAESLLDWSRRMNIAIGSAEGIAYLHHQSTPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSTVKRSINDWALPLACEKKFSELADPKLEGNYVEEELKRVVLIALLCAQSQPEKRPTILEVVELLKGESKDKLIQLENNEIFKSPPVVGHTDDETFTAEGSSDFISEEKESKPELEEKTGP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1982 367 MobiDBLite consensus disorder prediction 329 367 - -
Vra5g1982 367 ProSiteProfiles Protein kinase domain profile. 40 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1982 367 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Vra5g1982 367 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1982 367 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Vra5g1982 367 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Vra5g1982 367 MobiDBLite consensus disorder prediction 349 367 - -
Vra5g1982 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vra5g1982 367 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1982 367 PANTHER OS01G0253100 PROTEIN 1 342 IPR045271 GO:0004714|GO:0006468
Vra5g1982 367 PANTHER - 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1982 Vra-Chr5 25426431 25429381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1982 28 314 Trihelix Transcription Factor Family AT1G70460 50.859 6.08e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vra5g1982 Pkinase 5.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1982 - - gmx:100788153 692.96