LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1976	ATGATGGGTATATTAAGACGGGGAACATTGTTTTTCTGTGTGTTCCTTTTGTTTAGTACCTGTCTGGCGAAAGATCAACACATTCTTCAGATATATCCTGGCTTCAGTGCATCTCAGCCTGATTGGAGCGACCATAATGGTTTTTTCTTGATATCCAACAACTCTGCTTTCGGTTTTGGATTCTTCACTACTCTCGATGTTTCGTCGTTTGTTTTAGTTGTCTTGCACTTAAGCAGCTACAAAGTGGTTTGGACTGCCAACAGAGGTTTATTGGTTGGGAAATCTGCTAAGTTTGAGCTGGAGCGTAGTGGGAATGCATATTTGAAAGGTGATGATGGTGTGGTTTGGGCAACAAATACAACAGGGCATAAAGTGAGAGCCATGGAGTTGCTAGACTCAGGGAATTTGGTGTTGGTTGGGGATAATGGGACAGCCATTTGGCAAAGTTTTAGCCATCCCACTGACACTCTTTTGCCAGGGCAAGAATTTGTGGAGGGAATGATGCTCAAAAGCTTCCACAACAGCTTGAACATGATCTATTATCTTAGTTATAAGGCCGGTGATTTGCTTCTCTACGCAGGATTTGAAACTCCACAAGTGTACTGGTCCCTATCAGAAGAGGTTCATACAAGCTCCAAAAATTCCACCACCAAGGTTCACTCAGCTTCTCTGATGTCCAATTCATGGAGATTTTATGACACAAATCGAGCTTTGCTGTGGAAAGTTAATTTCTCTGAGCACTCAGATCAAAACTCATTGTGGGCTGCTACCTTGGATCCAACCGGTGCTATCACTTTTTATGACCTTAACAAAGGGAGGTCTCCCACCCCTGAGGCATTTAAGGTACCACAAGGCCCATGTAGCACTCCTCAGCCTTGTGATCCTTACTATGCTTGCTTAAATGACAACTGGTGCATCTGCCCCAAACTTCTCAGAACTCGTTTTAACTGCAAACCTCCCAACATCTCCACCTGTTCCAGTACTTCAATAGAACTTGTGTCTGTCGGTGAAGATCTTGATTATTTTGCTCTCAAGTACACTACACCGGTCTCAAAATCAACCCTGAATTCTTGCAAAGAGTCTTGCGTAGGAAACTGCTCTTGCCGTGTGCTTTTCTTTGAAAACAGTACCGGTAGATGCTTTCATTTTGATGAGACTGGGAGTTTCCAACGCAGTAAGTTGGGCACCAGTGGTTATGTTTCATTCATGAAGGTCTCCATTGGTAGTGACGATGGACATAGCAACAAAAATGGAAGGAATGACACGGTGCTAGTTGTAATCATAGTAGTTCTCACAGTTCTGGTTATTGTTGGTCTTGTCACAGTATTTTTGTACTACTACAAGAGGAAGAAGAATGTTGCTAGGTATCCTGAAGACACCTTTGAGGAAGACGATGATTTCTTGGACAGTATCTCTGGGATGCCTGCGCGTTTTACTTTTGCTGCTCTTTGTAGAGCAACTAAGGACTTCTCCACAAAAATTGGGGAAGGAGGTTTTGGCTCAGTGTATTTAGGTGAGCTCGAAGATGGCACCCAGTTGGCTGTGAAAAAATTGGAAGGTGTTGGACAAGGCGCCAAAGAGTTCAAAGCAGAAGTGTCCATAATTGGAAGTATTCATCATGTTCATTTGGTGAAGCTCAAAGGGTTCTGTGCTGAGGGTCCCCATCGCCTTCTTGTCTATGAATACATGGCAAGGGGTTCTCTCGACAAATGGATTTTCAAGAACAGTGAGAACAGTTTCTTGCTGAACTGGGAGACAAGGTACAACATTGCAATAGGCACGGCTAAGGGATTGGCCTATCTCCACGAGGAGTGTGAAGTGAGGATTATCCACTGTGACATCAAGCCACAAAATGTTCTTCTTGATGACAATTTCACAGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTAATGAGCCGCGAGCAGAGCCATGTGTTCACAACTCTGAGGGGCACAAGAGGGTATTTAGCACCAGAATGGATTACCAACTACGCAATTTCGGAGAAGAGTGATGTGTTCAGCTATGGCATGCTCTTGCTTGAGATAATCGGAGGAAGGAAGAACTATGATCAATGGGAAGGGGCAGAGAAGGCACATTTTCCTTCTTATGTGTTCAGAATGATGGATGAAGGGAAACTGAAAGAAGTTCTTGATCCAAAGATTGATATTGATAAGAAGGACGAAAGGGTTGAAACTGCTCTAAAAGTTGCTCTTTGGTGCATACAAGATGACGTGAGTTTGAGACCTTCCATGTCAAAGGTATCTCAGATGCTTGAAGGCTTGTGTGTTGTACCTGATCCCCCTTCATTATCTCAAGCTGGTACTTATTCAGCTTTCATGAAATTGAGTAGTGGAGAAGCTACTTCATCGGGACAGGCCAGTTTTTTCAGTAATGTACCCATGTCATGTGTTCAATTATCAGGACCAAGATGA	2433	0.4344	MMGILRRGTLFFCVFLLFSTCLAKDQHILQIYPGFSASQPDWSDHNGFFLISNNSAFGFGFFTTLDVSSFVLVVLHLSSYKVVWTANRGLLVGKSAKFELERSGNAYLKGDDGVVWATNTTGHKVRAMELLDSGNLVLVGDNGTAIWQSFSHPTDTLLPGQEFVEGMMLKSFHNSLNMIYYLSYKAGDLLLYAGFETPQVYWSLSEEVHTSSKNSTTKVHSASLMSNSWRFYDTNRALLWKVNFSEHSDQNSLWAATLDPTGAITFYDLNKGRSPTPEAFKVPQGPCSTPQPCDPYYACLNDNWCICPKLLRTRFNCKPPNISTCSSTSIELVSVGEDLDYFALKYTTPVSKSTLNSCKESCVGNCSCRVLFFENSTGRCFHFDETGSFQRSKLGTSGYVSFMKVSIGSDDGHSNKNGRNDTVLVVIIVVLTVLVIVGLVTVFLYYYKRKKNVARYPEDTFEEDDDFLDSISGMPARFTFAALCRATKDFSTKIGEGGFGSVYLGELEDGTQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMARGSLDKWIFKNSENSFLLNWETRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFTAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIIGGRKNYDQWEGAEKAHFPSYVFRMMDEGKLKEVLDPKIDIDKKDERVETALKVALWCIQDDVSLRPSMSKVSQMLEGLCVVPDPPSLSQAGTYSAFMKLSSGEATSSGQASFFSNVPMSCVQLSGPR*	811

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1976	810	SMART	blect_4	41	153	IPR001480	-
	Vra5g1976	810	CDD	B_lectin	46	153	IPR001480	-
	Vra5g1976	810	SMART	serkin_6	488	758	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g1976	810	SUPERFAMILY	alpha-D-mannose-specific plant lectins	79	204	IPR036426	-
	Vra5g1976	810	ProSitePatterns	Protein kinases ATP-binding region signature.	494	517	IPR017441	GO:0005524
	Vra5g1976	810	Gene3D	-	40	152	IPR036426	-
	Vra5g1976	810	Gene3D	Phosphorylase Kinase; domain 1	457	562	-	-
	Vra5g1976	810	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	609	621	IPR008271	GO:0004672\|GO:0006468
	Vra5g1976	810	Gene3D	Transferase(Phosphotransferase) domain 1	563	763	-	-
	Vra5g1976	810	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5	3	810	-	-
	Vra5g1976	810	Pfam	D-mannose binding lectin	82	163	IPR001480	-
	Vra5g1976	810	ProSiteProfiles	Protein kinase domain profile.	488	761	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g1976	810	ProSiteProfiles	PAN/Apple domain profile.	325	407	IPR003609	-
	Vra5g1976	810	ProSiteProfiles	Bulb-type lectin domain profile.	35	151	IPR001480	-
	Vra5g1976	810	CDD	STKc_IRAK	494	761	-	-
	Vra5g1976	810	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	3	810	-	-
	Vra5g1976	810	PIRSF	SRK	2	807	IPR024171	GO:0004674
	Vra5g1976	810	SUPERFAMILY	Protein kinase-like (PK-like)	471	759	IPR011009	-
	Vra5g1976	810	Pfam	Protein kinase domain	491	756	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1976	Vra-Chr5	25393597	25398289	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g1976	429	768	Receptor kinase-like Gene Family	AT5G20050	44.290	2.86e-89	287

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Vra5g1976		Pkinase	8.8e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g1976	-		-	gmx:100786024	1402.5