Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1971 ATGGCGCAAATTCTGCTCCATGGCACTCTCCATGCGACAATCTACGAAGTCGACAACCTCAAAATTGGTGGCGGCAATTTCTTAACCAAGATCGTACATAACATCGAGGAAACCGTTGGTTTTGGAAAAGGTGTGACTAAATTATATGCAACCATTGATCTAGAGAAGGCACGAGTGGGAAGGACGAGAATTCTAGAAAAGGAGCACAAGAATCCAAGATGGTACGAGTCTTTTCACATTTACTGTGCCCATATGGCATCAAACATCATATTCACAGTGAAAGATGATAATCCTATTGGGGCAACCTTAATCGGAAGAGCATATGTTCCTGTTGAGGAGATCTTGCATGGTGAAGAAATAGATAAATGGGTTGAAATATTGGATGAGGATAGAAATCCAATACATGGAAATTCCAAGATCCACGTGAAGCTGCAGTATTTTGATATTTCGAAAGACCGCAACTGGGCTCTTGGCATTAGAAGTCCTAAATTTCCTGGTGTTCCTTATACTTTCTTTTCACAAAGAAGAGGATGTAAGGTTTCTCTGTACCAGGATGCTCATGTATCAGACAACTTTGTCCCTAGAATACCACTCAGTGGAGGCCAGACTTACCAACCTCATAGATGTTGGGAGGATGTTTTTGATGCAATCACCAAAGCACAACACTTGATATACATTACTGGTTGGTCTGTATATACTGAGATTTCGTTGGTAAGGGATTCTAGAAGGCCAAAGCCTGGAGGAGACATAACACTCGGTGAGCTTCTGAAGAAAAAAGCAAGTGAAGGTGTCAGGGTTTTGATGCTGGTCTGGGATGATAGAACTTCCGTTCCCTTGTTAAAAAAAGATGGTTTGATGGCCACTCATGATCAAGAAACAGAGGAGTTCTTCAGGGGCACTGAAGTGAATTGTGTTTTATGCCCGCGCAATCCCGATGACGGTGGAAGCATTGTTCAGGATTTGGAAATTTCTACCATGTTTACTCATCACCAGAAAATCCTAGTCGTGGACAGTGAATTGCCGAGTGGAGAATCTGAGAAGCGAAGGATTGTTAGTTTTGTGGGGGGAATTGATCTCTGTGATGGGAGATATGACACTCCGTTCCATTCTCTTTTCAGAACCCTGGACACAGCACATCATGATGATTTTCATCAGCCTAACTTCGGTGGTGCAGCAATAACAAAAGGTGGTCCGAGAGAACCATGGCACGACATCCATTCTCGACTCGAAGGGCCTATTGCTTGGGATGTTTTGTTCAACTTTGAGCAAAGATGGAGGAAGCAAGGTGGAAAAGACTTGCTAGTTCCTCTGAGAGACCTTGAAGATGTGATTATTCCTCCATCCCCAGTAACTTACCCTGATGATCGAGAGACATGGAACGTTCAGTTATTTAGATCAATCGATGGTGGTGCTGCTTTTGGGTTCCCGGAGACTCCAGAAGAAGCTGCAAGAGTCGGGCTTGTGAGTGGGAAGGATAATATAATAGACCGTAGTATACAAGATGCTTATGTTAATGCCATTAGACGTGCAAAAAATTTCATCTATATTGAGAATCAGTATTTCCTAGGAAGCTGTTACGGTTGGAGTGCTGATGGCATTAAGCCTGAAGACATTGGCGCTTTGCATCTTATCCCGAAGGAGCTTTCACTTAAGATAGTGAGTAAGATTGAAGCTGGGGAAAGGTTCAGTGTGTATGTTGTTGTCCCAATGTGGCCAGAGGGTGTTCCAGAAAGTGCATCAGTTCAGGCAATATTGGATTGGCAGAGGAGAACAATGGATATGATGTACAAGGATGTCGTTCAGGCGCTCCAGGCCAAGGGAATAGAGGAAAATCCTCGGAACTATCTGACATTCTTCTGCCTTGGTAATCGGGAGGTGAAGAAAGAAGGAGAGTACGAGCCTCCACAAAGACCAGATCCTGATACAGATTACATCAGAGCCCAAGAGGCTCGGCGCTTCATGATATATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATTGTTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCAAGAGACTCTGAGATTGCAATGGGTGCTTATCAACCTTATCATTTGTTTACAAGTGAGCCAGCAAGGGGTCAGATTCATGGTTTTCGAATGGCATTGTGGTATGAGCACCTTGGCATGCTTGACGAGTCCTTCCTCTACCCTGAAAGAACAGAATGTATAAGGAAGGTGAACCAGATTTCTGACAAGTATTGGGATCTGTATTCAAGTGAGTCTCTTGAGCATGATCTTCCTGGCCACTTACTCCGTTACCCTATTGGGGTTTCCAGCGAAGGAACTGTCACTGAGCTTCCAGGATTTGAATTCTTTCCTGACACCAAGGCTCGTGTTCTTGGCAACAAAGTTGACTACTTGCCACCCATTCTTACTACTTAG 2424 0.4373 MAQILLHGTLHATIYEVDNLKIGGGNFLTKIVHNIEETVGFGKGVTKLYATIDLEKARVGRTRILEKEHKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEILHGEEIDKWVEILDEDRNPIHGNSKIHVKLQYFDISKDRNWALGIRSPKFPGVPYTFFSQRRGCKVSLYQDAHVSDNFVPRIPLSGGQTYQPHRCWEDVFDAITKAQHLIYITGWSVYTEISLVRDSRRPKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVPLLKKDGLMATHDQETEEFFRGTEVNCVLCPRNPDDGGSIVQDLEISTMFTHHQKILVVDSELPSGESEKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFGGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVPLRDLEDVIIPPSPVTYPDDRETWNVQLFRSIDGGAAFGFPETPEEAARVGLVSGKDNIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSCYGWSADGIKPEDIGALHLIPKELSLKIVSKIEAGERFSVYVVVPMWPEGVPESASVQAILDWQRRTMDMMYKDVVQALQAKGIEENPRNYLTFFCLGNREVKKEGEYEPPQRPDPDTDYIRAQEARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLFTSEPARGQIHGFRMALWYEHLGMLDESFLYPERTECIRKVNQISDKYWDLYSSESLEHDLPGHLLRYPIGVSSEGTVTELPGFEFFPDTKARVLGNKVDYLPPILTT* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1971 807 SUPERFAMILY Phospholipase D/nuclease 446 737 - -
Vra5g1971 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Vra5g1971 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Vra5g1971 807 PANTHER PHOSPHOLIPASE D ALPHA 1 2 807 - -
Vra5g1971 807 Pfam C2 domain 8 126 IPR000008 -
Vra5g1971 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vra5g1971 807 SMART C2_3c 9 123 IPR000008 -
Vra5g1971 807 Gene3D C2 domain 6 156 IPR035892 -
Vra5g1971 807 Pfam Phospholipase D C terminal 725 797 IPR024632 -
Vra5g1971 807 PANTHER PHOSPHOLIPASE D 2 807 IPR015679 -
Vra5g1971 807 CDD C2_plant_PLD 2 147 - -
Vra5g1971 807 CDD PLDc_pPLDalpha_2 491 699 - -
Vra5g1971 807 Gene3D Endonuclease Chain A 199 438 - -
Vra5g1971 807 SUPERFAMILY Phospholipase D/nuclease 151 444 - -
Vra5g1971 807 Gene3D Endonuclease Chain A 472 696 - -
Vra5g1971 807 SMART pld_4 653 680 IPR001736 GO:0003824
Vra5g1971 807 SMART pld_4 325 363 IPR001736 GO:0003824
Vra5g1971 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Vra5g1971 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Vra5g1971 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Vra5g1971 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1971 Vra-Chr5 25370454 25374774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1971 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 81.852 0.0 1419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1971 K01115 - gmx:100784434 1558.89