Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1966 ATGGTGAAGTTGGTTGTGAAAGCTGGGAGCAGACCTCCATGGGTGGGTCTTGCATCTGCAGTTTGGATTCAAATAGCAGTTGGAAATCCATTCAACTTTCCTCTCTATTCTTCTGCCCTCAAATCTGTTTTGTCTCTCAACCAGCAACAGATCACTATTCTCGGAGTGGCCAATGATGTTGGGGAGAGCATGGCTCTGCTTCCAGGCATTGCCTCCAACAAATTCCCTCCTTGGGCTTTTCTTCTCCTTGGTTCTCTCCTTTGTTTCTTTGGTTATGGCCTTATCTTCCTTACTGTTACACAAACTGTTTCCCAACTCCCTTATATCCTGATATGCCTTGCCCTATGTGTTGCCGCTAACAGCAGTGCATGGTTTGGAACAGCTGTGTTTGTCACCAACATGAGAAACTTTCCTCTCAGTAGAGGCACCATCTCTGGCATTCTTAATGGTTATGGAGGAATTAGTGCTGAAGTATACACCTTAATATATAGCTTGGTGCTGAAAGGGTCTGCTTCTAAATTGCTTTTGTTCCTTACTGTTGGACTTCCTGCTGTATGTTTATTGATGATGTTCTTCATTCGGCCTTGCACTCCTTCTGGTGAAGACTCTTCAGTGCATGTGCATTTTATTTTTGTCCAAGCTGCAAGTGTTTTGCTTGCCTCCTATCTTGTTGTCACCACAATTGTGAGTGACGTGGTCTCTATAAATGATGCTGTAACCTACTTCTTGGTTGCAATAATGGTTTTACTTCTGATAGCTCCCCTTGCAATTCCTATCAAAATGACACTATTTCCTTCTAATTCCAAGTGCAACGTTTCACTGGTTGGTTCTTCAGATAATTTGGCATCGGAGAGTGACATTTCAACGCAGACAAGTCCATTGCTAACACCATCTTCCTCAGCTGCTATTCTTGAAAGTTTTCATGAAAGGGGTGATGTCTCGGATGTTGAGATGCTCATTGCAGAAGGACAGGGAGCAGTGATGCAGAAAAGGAGACCTAAGAGGGGAGATGATTTCAAGTTCTGTGAAGCTTTCATCAAAGCAGACTTCTGGCTTTGCTGGTTTGCTTATTTTCTTGGGGCCGGCTCAGGAGTAACGGTTCTCAATAATTTGGCTCAAATTGGAGTTGCCTTAGGTGTAGAAGATACAACCATATTATTGTCAGTCTTCAGCTTCTGCATATTTATTGGCCGCCTTGGCGCTGGTGTTATTTCTGAATACTTTGTCAGGTTGATAGCACTACCTCGAACATTTTGGATGGCATGTGCACAAATAATCATGATCATAGCATTTTTATTTTATGCTTCTGCTCTGAACGGCACTCTTTATGCTGCAACTGCTCTACTTGGTATCTGCTACGGGGTTCAATGTTCTATAATGGCTCCAACCGTCTCAGAGATTTTTGGTCTGAAACACTTTGGTGTTATTAGTAGCTTCATGATGCTAGGCAATCCAATTGGTGCCCTTATTTTCTCTGTTTTTCTTGCGGGCAACGTGTACGATACAGAAGCTGCAAAGCAAGGAAACTCCACCTGCTATGGTGCAGATTGCTTCAGGTTGACTTTTCTGGTTTTGGCTGGTGTCTGTGGACTTGGTACCATCTTGAGTATTATTTTGACAATTAGAATGCGACCAGTATATAAAATGTTGTATGCTGGAGGTTCATTTCGTCTATCTCAGAATTCAGGTCACTGA 1695 0.4283 MVKLVVKAGSRPPWVGLASAVWIQIAVGNPFNFPLYSSALKSVLSLNQQQITILGVANDVGESMALLPGIASNKFPPWAFLLLGSLLCFFGYGLIFLTVTQTVSQLPYILICLALCVAANSSAWFGTAVFVTNMRNFPLSRGTISGILNGYGGISAEVYTLIYSLVLKGSASKLLLFLTVGLPAVCLLMMFFIRPCTPSGEDSSVHVHFIFVQAASVLLASYLVVTTIVSDVVSINDAVTYFLVAIMVLLLIAPLAIPIKMTLFPSNSKCNVSLVGSSDNLASESDISTQTSPLLTPSSSAAILESFHERGDVSDVEMLIAEGQGAVMQKRRPKRGDDFKFCEAFIKADFWLCWFAYFLGAGSGVTVLNNLAQIGVALGVEDTTILLSVFSFCIFIGRLGAGVISEYFVRLIALPRTFWMACAQIIMIIAFLFYASALNGTLYAATALLGICYGVQCSIMAPTVSEIFGLKHFGVISSFMMLGNPIGALIFSVFLAGNVYDTEAAKQGNSTCYGADCFRLTFLVLAGVCGLGTILSIILTIRMRPVYKMLYAGGSFRLSQNSGH* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1966 564 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 3 564 - -
Vra5g1966 564 Gene3D MFS general substrate transporter like domains 347 548 IPR036259 -
Vra5g1966 564 SUPERFAMILY MFS general substrate transporter 235 545 IPR036259 -
Vra5g1966 564 Pfam Nodulin-like 13 259 IPR010658 -
Vra5g1966 564 SUPERFAMILY MFS general substrate transporter 12 197 IPR036259 -
Vra5g1966 564 CDD MFS_Mch1p_like 12 533 - -
Vra5g1966 564 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1966 Vra-Chr5 25342030 25344907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1966 1 564 Nodulin-like Gene Family AT1G80530 60.777 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1966 - - adu:107459780 781.556