Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1964 ATGTCTAACAGAAATGAATTGCAGCGTCAGAAGGAGTCCTCAAAATCTGTAGGCAATTCATCTTTTAAGGAATCTGAACTGTATTTGGGATCTGAATTGGAAGACGAGGATGACGATTTCCATACGTACATCGATAATTACCCCTTTGTTATAGGCTCCAATAAAGGCTCTGGGATACCTGGGGCTGTTTTCAATTTAACAACCACAGTTATTGGGGCAGGGATCATGGCTCTCCCTGCCACTATGAAAGTTCTAGGATTGGTTTTGGGGATTATTTTGATAATTCTTATGGGAATTTTGTCTGAAATTAGCTTGGAATTGTTGGTGAGGTTTTCTGTTTTGTGTAAGGCATCGTCCTATGGGGAGGTTGTTGAGCATGCAATGGGAAAGCCTGTAAGGATTTTGTCTGAAATCTGCATTATTTTGAACAATGGCGGTGTTTTGGTGGTTTACTTGATAATCATGGGGGATGTTATGTCTGGTTCGTCTCACCACATGGGGGTTTTTGATCAGTTAATGGGGAATGGGGAATGGGATCAAAGAACGATTGTGGTTTTGGTTGTCATGGTGGTTTTCCTTGCTCCCCTTTGTTCACTTGACAAGATTGATTCATTGAGCTTGACCTCAGCTGCTTCCGTGGCTCTAGCTGTTTTGTTTGTCGTTGTTGTTTTTACAGTTGCTTTCATCAAGCTCGTGGAAGGACGGATTGATTCTCCCAGATTGGCTCCTGATCTTAGCTCAAAAACTGCAATTTTGGATTTTCTTGTTGCCATACCCATCATGACCAATGCATATGTTTCCCAGTTTAATGTGCCGCCAATATATAATGAGCTTGAACAACGATCTCCTCAGAAGATGAACACGGTTGGGAGGTACACCACAGTTTTGTGCATCCTAGTTTATGCTTCCACTTCCATATCGGGTTACCTTCTATTTGGGAAAGACACAGAGGCTGATGTGCTGACTAATTTTGATAGGGATCTTGGAATTCGGTATAGCTCGGTCTTGAACTATATTGTCCGGATTGGCTACATTCTTCATTTGATACTTGTTTTCCCTGTTATTCATTTTTCACTGCGCCAAACAGTGGACGAATTATTGTTTGAGGGATCACCTCCTCTTTCAGAAAGTAAGAAGAGATCTTTGGGGTTGACTGCGGCTCTGTTGGTCCTCATATATATTGCCTCTACCATGATTCCAAACATCTGGACAGCTTTTAAGTTCACTGGCGCAACCACCGCTGTTTCATTGGGTTTTATATTTCCTTCTCTTATTTCATTGAGACTAAAACATCTCGGAGATCTAAGCTACGGGGAATGGGTTTTGTCATGGTTGATGTTGCTATTAGCTGTCACTGTTAGCATAGTAGGAGTTGTTAGCAATGTCTATAGCCTTCAGACTAACTCTTATTAG 1413 0.4161 MSNRNELQRQKESSKSVGNSSFKESELYLGSELEDEDDDFHTYIDNYPFVIGSNKGSGIPGAVFNLTTTVIGAGIMALPATMKVLGLVLGIILIILMGILSEISLELLVRFSVLCKASSYGEVVEHAMGKPVRILSEICIILNNGGVLVVYLIIMGDVMSGSSHHMGVFDQLMGNGEWDQRTIVVLVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVVVVFTVAFIKLVEGRIDSPRLAPDLSSKTAILDFLVAIPIMTNAYVSQFNVPPIYNELEQRSPQKMNTVGRYTTVLCILVYASTSISGYLLFGKDTEADVLTNFDRDLGIRYSSVLNYIVRIGYILHLILVFPVIHFSLRQTVDELLFEGSPPLSESKKRSLGLTAALLVLIYIASTMIPNIWTAFKFTGATTAVSLGFIFPSLISLRLKHLGDLSYGEWVLSWLMLLLAVTVSIVGVVSNVYSLQTNSY* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1964 470 Pfam Transmembrane amino acid transporter protein 57 459 IPR013057 -
Vra5g1964 470 PANTHER AMINO ACID TRANSPORTER AVT6E 34 468 - -
Vra5g1964 470 MobiDBLite consensus disorder prediction 1 23 - -
Vra5g1964 470 PANTHER AMINO ACID TRANSPORTER 34 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1964 Vra-Chr5 25335948 25338008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1964 4 469 Amino Acid or Auxin Permease AAAP Family AT1G80510 71.489 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1964 - - var:108333183 732.635