Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1962 ATGTCTAACAGGAACGAATATTCTTCTTTACCCGTTAGCTCCTATTTAGAATTGCAGCGTCAGAACGAGTCCTCAAAATCTGTAAGCATTCCTTCTTATGACGAATCCGAAGTGTATTTGGGATCCAAAATCGAAGACGAGGATGAAGATTTCGAAACGGACATCGATAATTACCCCCTTGTGATTGTGGGCTCCAATAAAGGCTCTGGGATACCTGGGGCTGTTTTCAATTTAACAACTACAGTTATTGGAGCAGGGATCATGGCTCTCCCTGCCACTATGAAAGTTCTAGGATTGGTTTTGGGGATTATTTTGATTATTCTTATGGGAATTTTGTCTGAAATTAGCGTCGAACTGTTGGTGAGGTTTTCTGTTTTGTGTAAGGCATCGTCCTATGGGGAGGTTGTTCAGCATGCAATGGGAAAACCTGTGAGGATTTTGTCTGAAATCTGCATCATTTTGAACAATGCCGGTGTTTTGGTGGTTTACTTGATAATCATGGGGGATGTTATGTCTGGTTCCTCTCACCATATGGGGGTTTTTGATCAGTTAATGGGGAATGGGGCGTGGGATCAAAGGAAGATTGTGGTTTTAGTTGTCATGGTGGTTTTCCTTGCTCCCCTCTGTTCACTTGACAAGATTGATTCATTGAGCTTGACCTCGGCTGCCTCTGTAGCTCTTGCTGTTTTGTTTGTCGTTGTTGCTTTTACGGTTGCTTTCATCAAGCTCGTGGAAGGACGGATTGATTCTCCCAGATTGGCTCCTGATCTTAGCTCCAAAACTGCAATTTTGGATTTTCTTGTTGCGATACCCATCATGACCAATGCATATGTTTGCCAGTTTAATGTGCCGCCAATATATAATGAGCTTGATCAACGGTCTCCTCAGAAAATGAACATGGTTGGCAGGTACACCACAATTTTGTGCATCCTAGTTTATGCTTCCACTTCCATATCGGGTTACCTGCTCTTTGGGAAAGACACAGAGGCTGATGTACTAACTAATTTTGATAAGGATCTTGGTATCCGGTATAGCTCGGTCTTGAACTATATTGTCCGGATTGGCTACATTCTTCATTTGATACTTGTTTTCCCTGTTATTCATTTTTCACTGCGCCAAACAGTGGACGCATTATTGTTTGAGGGATCACCTCCTCTTTCAGAAAGTAAGAAGAGATCTTTGGGGTTGACTGCGGTTCTGTTGGTCCTCATATATATTGGGTCTACTATGATTCCAAACATCTGGACAGCTTTTAAGTTCACTGGGGCAACCACGGCTGTTTCATTGGGTTTTATATTTCCTTCTCTTATTTCATTGAGACTAAGACATCTGGGTGATCTAAGCTACGGGGAATGGGTTTTGTCATGGTTGATGTTGGTATTAGCTGTGACTGTTAGCATAGTAGGAGTTGTTAGCAATGTTTATAGCCTTGAGAGTAAGTCTTAG 1446 0.4212 MSNRNEYSSLPVSSYLELQRQNESSKSVSIPSYDESEVYLGSKIEDEDEDFETDIDNYPLVIVGSNKGSGIPGAVFNLTTTVIGAGIMALPATMKVLGLVLGIILIILMGILSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRILSEICIILNNAGVLVVYLIIMGDVMSGSSHHMGVFDQLMGNGAWDQRKIVVLVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVVVAFTVAFIKLVEGRIDSPRLAPDLSSKTAILDFLVAIPIMTNAYVCQFNVPPIYNELDQRSPQKMNMVGRYTTILCILVYASTSISGYLLFGKDTEADVLTNFDKDLGIRYSSVLNYIVRIGYILHLILVFPVIHFSLRQTVDALLFEGSPPLSESKKRSLGLTAVLLVLIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLISLRLRHLGDLSYGEWVLSWLMLVLAVTVSIVGVVSNVYSLESKS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1962 481 Pfam Transmembrane amino acid transporter protein 69 470 IPR013057 -
Vra5g1962 481 PANTHER AMINO ACID TRANSPORTER 44 480 - -
Vra5g1962 481 PANTHER AMINO ACID TRANSPORTER AVT6E 44 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1962 Vra-Chr5 25321825 25323742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1962 5 481 Amino Acid or Auxin Permease AAAP Family AT1G80510 71.253 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1962 - - var:108333183 768.459