Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1961 ATGGATCGAGAATGGGGATCGAAGCCCGGGAGCGGAGGCGCGGCGTCGGCGCAGAACGAAGCCATCGACCGGCGAGAGCGTCTCCGGCGACTGGCTCTGGAGACGATAGACCTAGCGAAGGACCCGTATTTCATGCGGAACCACCTTGGGAGCTACGAGTGCAAACTGTGTCTCACTCTCCACAACAACGAGGGCAACTACTTGGCCCACACTCAGGGCAAGCGCCACCAGACCAACTTGGCCAAACGTGCTGCTCGCGAGGCCAAGGACGCCCCCGCTCAGCCCCAACCCCACAAGCGCAAAGTCACCCTTCGCAAAACAGTTAAGATTGGACGCCCTGGGTACCGTGTGACCAAGCAGTATGATCCTGAGACCAAGCAAAGATCTCTACTGTTCCAGATTGAGTATCCCGAGATTGAAGACCTTGCCAAGCCGAGGCACCGCTTTATGTCCTCCTACGAACAGAGGGTGCAACCCTTTGATAAAAGATATCAGTACCTTCTGTTTGCCGCTGAACCGTATGAAATAATTGCATTCAAGGTGCCCAGCACGGAGATTGATAAGTCTACTCCAAAGTTTTTCTCGCACTGGGATCCGGACTCAAAGATGTTCACGTTGCAATTGTATTTTAAAACCAAGCCACCGGAGGCAAACAAACCACAGCCTCCCTCTGCAGCCAATGGCACAGCGACATCTGGTGTTCCACCAAGGCCTTTGCCCCCACCACCTCAAGCTCCACTACCCCCACCTCCTCCTCCCCCACAAGGGCTACCTCCTGGTGCACCTATGGCAAATCCTCCTAGAGCTCCTCCACCTCCAATGCCAGGATCCATGCCACCTCCCCCTCCTATGGCTGCAGCTAACGGTCCTAGACCTTCTGGTGGAATGCCATCTGTACCACCCCCACCCCCTATTGCAAGTGGGACATCCGGTTTCAACATGGGTACTAGACCTCCATCAATGCCTCCTCCACAAGGTTTTCCTACCCAACCAATGCAGAATCAGGGTGTCCGTCTTCCTCCGCCACCCCCTAACATGGGACAGTAG 1047 0.5549 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVTLRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPPSAANGTATSGVPPRPLPPPPQAPLPPPPPPPQGLPPGAPMANPPRAPPPPMPGSMPPPPPMAAANGPRPSGGMPSVPPPPPIASGTSGFNMGTRPPSMPPPQGFPTQPMQNQGVRLPPPPPNMGQ* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1961 348 Gene3D - 94 218 - -
Vra5g1961 348 MobiDBLite consensus disorder prediction 234 307 - -
Vra5g1961 348 MobiDBLite consensus disorder prediction 317 348 - -
Vra5g1961 348 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Vra5g1961 348 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vra5g1961 348 Pfam Zinc-finger of C2H2 type 52 76 - -
Vra5g1961 348 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 340 - -
Vra5g1961 348 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g1961 348 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Vra5g1961 348 MobiDBLite consensus disorder prediction 213 348 - -
Vra5g1961 348 SMART CactinC_cactus_3 89 217 - -
Vra5g1961 348 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Vra5g1961 348 Gene3D Classic Zinc Finger 46 89 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1961 1 228 C2H2 Transcription Factor Family AT2G32600 89.035 1.67e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1961 K12826 - gmx:100791333 536.184