Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1954 ATGGAGCTTGTGTGGTCAGGGCCACATCCATCGTCTGAAAGTGATCTGAAAATTCCATTTTCAGAGAATCCTCCACCTTGCTCAAAGCCAGTGCTAGCTTCCATGGATATCCCAAAGGAGAAGAAGGAGGACCAAGAACATCCCTATGAGTCAAAGCCAGAACTCAACCTCATAAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCATGTCATGGAGGAGGACACGGTGATGAATTGGAGCCAAGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGTTCGCAGGCCCTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAGAGCTGCTGCTGCTGCTGCAGTTCCAACAGATTTTGCACACAGGTATTCCAGCATGGCTTCTCTGCCTCTGCATGGCTCCTATAACAGGTCACTGGGAATTCAGGCACATTCCACGATCAACAAACGCTCTTTTCAAACACAAACACCTTGTTTTGGTTTGTCCCATAGTCATGCTCAAAACTGGTGGCAGAAGCAGCCTTTGTACTCACAACAACAGGCAACTGGGGCAGAATCTGAATCACCCTTGGCTGGTGGCATCCAACGGCTAGGGAAGTTTTCTCCAAGGCTGGTGCCTGAGGGATTTGGAGGCTACTGGTTGGACAGTGTTCACCATTTGAAGACTAAACAAGAGGAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA 750 0.4733 MELVWSGPHPSSESDLKIPFSENPPPCSKPVLASMDIPKEKKEDQEHPYESKPELNLINCIDTNLSMNSSESCHGGGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHRAAAAAAVPTDFAHRYSSMASLPLHGSYNRSLGIQAHSTINKRSFQTQTPCFGLSHSHAQNWWQKQPLYSQQQATGAESESPLAGGIQRLGKFSPRLVPEGFGGYWLDSVHHLKTKQEELHKLDLSLKL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1954 249 MobiDBLite consensus disorder prediction 1 51 - -
Vra5g1954 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Vra5g1954 249 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vra5g1954 249 Gene3D Classic Zinc Finger 67 135 - -
Vra5g1954 249 SUPERFAMILY beta-beta-alpha zinc fingers 84 114 IPR036236 -
Vra5g1954 249 MobiDBLite consensus disorder prediction 35 51 - -
Vra5g1954 249 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 35 249 IPR044246 GO:0009788
Vra5g1954 249 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 35 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1954 Vra-Chr5 25244372 25248718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1954 54 249 C2H2 Transcription Factor Family AT5G10970 43.721 1.12e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g1954 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1954 - - vun:114185863 438.343