Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1953 ATGAAAACTTCACTTTCACATTCTCAAAGACGCTTCACCAACAAGTTTGAAGCAGCAATCACCATCATGGCTAGACCCCAACAACGCTATCGTGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACCAGAATATGGCTGGGAACGTTTGAAACAGCGGAAGATGCTGCCAGAGCGTACGATGAAGCGGCAAGGTTAATGTGCGGGCCAAAAGCACGCACCAATTTCGCTTACAATCCTAACGACCCACAATCATCTTCATCGAAGCTACTTTCTGCTACTCTGACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCGCTTCAAATGAGCAAGCAGAAGGGATCGCAGAAAGAGGCTGAAGAAGGGTCATCCAATTCAGGCAATGCCGTTGCGGGAACGAGCGCGGACACAACAGGATTCAGATGGGCAGAGAAGAGACACGAGGAAGTTCAGTGGGTAGAAGAATACCATGTTGAAGTGGGAGAAGCAGAACAGCAACAGTTTCAGCCAGTTCTTGAAGATGATCACATTGAACAGATGATACAGGAGCTTCTTGATTATGGTTCAATGGAGTTTAGTTGTGTGGACTCAGTCTAA 630 0.481 MKTSLSHSQRRFTNKFEAAITIMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFAYNPNDPQSSSSKLLSATLTAKLHKCHMASLSLQMSKQKGSQKEAEEGSSNSGNAVAGTSADTTGFRWAEKRHEEVQWVEEYHVEVGEAEQQQFQPVLEDDHIEQMIQELLDYGSMEFSCVDSV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1953 209 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vra5g1953 209 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Vra5g1953 209 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vra5g1953 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 205 - -
Vra5g1953 209 PANTHER ETHYLENE RESPONSE FACTOR 23 205 - -
Vra5g1953 209 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Vra5g1953 209 MobiDBLite consensus disorder prediction 119 146 - -
Vra5g1953 209 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Vra5g1953 209 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Vra5g1953 209 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vra5g1953 209 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1953 Vra-Chr5 25235070 25236567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1953 23 206 AP2-EREBP Transcription Factor Family AT5G25190 63.243 3.51e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g1953 AP2 9.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1953 - - gmx:100812021 308.531