Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1950 ATGAATCTTCTTGTTCTCTTCCTACCTATTTCGGTGCTTAGCATTTCTCTTTCATCGCCAATTCTTCATGCTGCATCTTTCATTTCTGTTTCTCAAAATGCACAAGCTGAGTCTCCAGGTATTCATGAGGTCAGAGCAGTGCACCATCAGAATTTGAATAAGAGAATTCTAACTGCATTAGTTTCTTGTTCTGGTCTTCTTGGTGGAGTCTTCCTAATCATACTTTATGTCTGGTTCCGTCGACATAAAACCTTAAAACTCTCCAGAAGTAAAAGCCAAGAAACCACTGAGGCTGCAAAAGGGGAGACTTTAAGCTCGGTTAATGCAAAACTTAACTACTCAAGGATGGCTGATAAGAAGAGTTCAGTTGCTATTTTTGACTATCAGCTGTTGGAGGCTGCCACGAACAGCTTTAGCACAAGCAGTATTATGAGAAAGAGTGGTTCTAGAATCATTTACAGAGCTAACTTTGATGAGCATTTCCAGGCAGCTGTGAAGAAAGCAGATAGTGACGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATGCGTCATCAGAATATCATAAAACTTATGGGTTATTGTGTTCATGGTCAATCGAGGTTTCTTGTTTATGAATTGATGGAGAACGGGTCTCTGGAAACTCAATTGCATGGTCCTAATCGAGGGGCATCTTTAACCTGGTATCTAAGGTTAAGAATTGCTGTTGATGTTGCCAGAGCATTAGAATATCTCCATGAACACTCCAATCCTCCCGTGGTTCATCGAGACTTACAATCTTCCAATGTTCTTCTGGATTCTAACTTTAATGCGAAGTTATCAGATTTTGGATTTGCTATGGTTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTAGGATACGTGGCCCCTGAGTACATATCACATGGTAAACTAACTGACAAGAGCGATGTCTATGCTTTTGGGGTTGTCCTTCTAGAACTCCTAACCGGAAGAAAACCCATGGAGAACATGACCTCAAACCAATATCAATCCCTTGTATCATGGGCCATGCCTCAGCTAACTGACAGATCGAAGCTTCCAAGTATTCTTGATCCTGTTATCAGAGACACAATGGATTTGAAGCACTTGTATCAGGTTGCTGCAGTTGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCACTCATAACAGACGTGCTGCACTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCATTAAGAGTTACAGAATCCATCAGCTCAGAGAACTCTCATTGA 1287 0.4172 MNLLVLFLPISVLSISLSSPILHAASFISVSQNAQAESPGIHEVRAVHHQNLNKRILTALVSCSGLLGGVFLIILYVWFRRHKTLKLSRSKSQETTEAAKGETLSSVNAKLNYSRMADKKSSVAIFDYQLLEAATNSFSTSSIMRKSGSRIIYRANFDEHFQAAVKKADSDADREFENEVSWLSKMRHQNIIKLMGYCVHGQSRFLVYELMENGSLETQLHGPNRGASLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDLQSSNVLLDSNFNAKLSDFGFAMVSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMTSNQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTESISSENSH* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1950 428 PANTHER OS01G0253100 PROTEIN 23 419 IPR045271 GO:0004714|GO:0006468
Vra5g1950 428 Gene3D Transferase(Phosphotransferase) domain 1 211 409 - -
Vra5g1950 428 PANTHER RECEPTOR-LIKE KINASE 23 419 - -
Vra5g1950 428 SUPERFAMILY Protein kinase-like (PK-like) 114 404 IPR011009 -
Vra5g1950 428 Pfam Protein tyrosine and serine/threonine kinase 158 361 IPR001245 GO:0004672|GO:0006468
Vra5g1950 428 Gene3D Phosphorylase Kinase; domain 1 97 210 - -
Vra5g1950 428 ProSiteProfiles Protein kinase domain profile. 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1950 Vra-Chr5 25217122 25221564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1950 11 350 Receptor kinase-like Gene Family AT1G80640 46.221 5.00e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vra5g1950 PK_Tyr_Ser-Thr 8.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1950 - - gmx:100811188 731.48