Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1946 ATGGAAATGGACGATGACAGGCATGGGGATCTGATGTTAGAAGAGTGCCACATACAAGAGGAGGAGTTCCTCAGGGAGATACTTGGTGAACCGGGTTTTTCTTCTGAAACTGAAACTCACCACCACAACAACTTCACAACCCCCACAGATGCTCACACGCTAACAATGGTAGCCTCCAAATCCAAAACCTCTTCTTCTCCCAGAACATATATTTTGTCTTTCGATAGCTCTGCCATTATACCAGCCACCCCTCAACCACCGTCTCCTTCCACTCTCTCCGCCAACAAACGCCACCAAAATCTCAACCCAGAACAACCAAAACCCAAGTCCACAACCCAAACTGGAAAGAGGGCCAGAAACGGTTCCGTTGACCACATCATGGCCGAAAGAAAAAGGAGACAGGAACTCACCCAGAGGTTCATAGCACTTTCAGCCACCATTCCCGGTCTCAAGAAGACGGACAAGAGTTCGATACTGGGGGAAGCGATTAATTACGTGAAAGAACTTAAAGAACGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCGGTGACGATCCTGAAGAAGAGTGATGTGTGTGAGTCAAGTGAAAGAGATTCGAAGGATTGGTGTAGAATGCTCCCTGATATTGAAGCTAGAGTGATGGAGAATGAGGTGCTGATTGAGATTCACTGTGAGAAGGAAGAAGGGGTTGAGCTGAAATTATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACAGCCACCAGCGTGTTGCCCTTTGGGAATTCAACTCTTGGCATTACCATCATCGCTCAGATGGGTGACGCGTACAAGATGACAGTCAACGATGTAGTCAAAAATCTGAGGAAAGTCTTCATGAATCACATGAACATCCATGGCGATCCGTACTAG 903 0.4673 MEMDDDRHGDLMLEECHIQEEEFLREILGEPGFSSETETHHHNNFTTPTDAHTLTMVASKSKTSSSPRTYILSFDSSAIIPATPQPPSPSTLSANKRHQNLNPEQPKPKSTTQTGKRARNGSVDHIMAERKRRQELTQRFIALSATIPGLKKTDKSSILGEAINYVKELKERVTELEERNKRGKESVTILKKSDVCESSERDSKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIIAQMGDAYKMTVNDVVKNLRKVFMNHMNIHGDPY* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1946 300 Pfam Helix-loop-helix DNA-binding domain 125 169 IPR011598 GO:0046983
Vra5g1946 300 Coils Coil 159 186 - -
Vra5g1946 300 MobiDBLite consensus disorder prediction 89 119 - -
Vra5g1946 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Vra5g1946 300 PANTHER BHLH TRANSCRIPTION FACTOR 9 295 - -
Vra5g1946 300 MobiDBLite consensus disorder prediction 81 127 - -
Vra5g1946 300 SMART finulus 126 175 IPR011598 GO:0046983
Vra5g1946 300 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 295 - -
Vra5g1946 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 187 IPR036638 GO:0046983
Vra5g1946 300 Gene3D - 110 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1946 Vra-Chr5 25176268 25178275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1946 88 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.991 7.29e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g1946 HLH 6.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1946 - - pvu:PHAVU_005G181300g 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0008 9 82294 86138 Vra5g1946 5 25176268 25178275 PCT