Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1945 ATGGAGGAAAACCAGCGGGGGAAGTTGTCTTCCCATATGGAAATGGAGGATGAGGTGTTGAATGAATGTTTGTGCCAGACGAAGCCCTTTGATGAAGAGTTTTTAAGAGATATTCTACAGCAGCCGCAAGAGGGTGCAGCTACAGGTCTTAATAGTTTTGGTGAGACAAGCTGTGTGGCAACCACATCTCCAACCACCTATGTACTGTCTTTTGACAAATCCGATGATCCTCATTCTGTGTCTGCTTGGAAAGATGTCTCCCACAACTTGCCTTTGTCCTCGACAAGGACCAACCAAGGAACAAGGAAGACTCGAAGCGCTTCTGAATCAATGGATCACATCATGTCAGAGAGAAAGAGGAGACAGGAACTCACCAGAAAATTCATAGCACTTGCTTCCACTATCCCTGGCTTGAAGAAGATGGACAAAGCACATGTACTAAGAGAAGCAATAAATTACGTGAAGCAACTGAAAGAACGTGTAGAAGTGCTAGAAGAAGATATCCAGAAGAACGGTGCAGAATCATCGATCACCATAACAAGATCTCATCTATGCATTGATGACACAAACAGTGATGAATGGTATGGGTCCAATGAAGCAGTTCCTGCTGAAGTTGAAGCCAGAGTCTTAGGGAAGCAAATGTTGATCAAAATTCACTGTGGAAAACAAAAGGGTATTCTGCTCAAAATATTGTCTCAGCTTGAACGTCTTCATCTCTTGATATCCACTAGCAATGTCTTGCCACTTGGAAGTACCATTGACATCACCATCATTGCTCAGATGGGTGATGAATACAAGATGGTGGTGAAGGATCTAGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCGTGTGTGTCACAGTGA 867 0.4337 MEENQRGKLSSHMEMEDEVLNECLCQTKPFDEEFLRDILQQPQEGAATGLNSFGETSCVATTSPTTYVLSFDKSDDPHSVSAWKDVSHNLPLSSTRTNQGTRKTRSASESMDHIMSERKRRQELTRKFIALASTIPGLKKMDKAHVLREAINYVKQLKERVEVLEEDIQKNGAESSITITRSHLCIDDTNSDEWYGSNEAVPAEVEARVLGKQMLIKIHCGKQKGILLKILSQLERLHLLISTSNVLPLGSTIDITIIAQMGDEYKMVVKDLVKELRQVAMMKSCVSQ* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1945 288 Coils Coil 147 174 - -
Vra5g1945 288 MobiDBLite consensus disorder prediction 90 105 - -
Vra5g1945 288 Gene3D - 98 173 IPR036638 GO:0046983
Vra5g1945 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 175 IPR036638 GO:0046983
Vra5g1945 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
Vra5g1945 288 PANTHER BHLH TRANSCRIPTION FACTOR 18 286 - -
Vra5g1945 288 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 18 286 - -
Vra5g1945 288 SMART finulus 114 163 IPR011598 GO:0046983
Vra5g1945 288 MobiDBLite consensus disorder prediction 90 114 - -
Vra5g1945 288 Pfam Helix-loop-helix DNA-binding domain 113 158 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1945 Vra-Chr5 25170158 25172728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1945 99 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.213 1.88e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g1945 HLH 9.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1945 - - aprc:113854852 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1945 5 25170158 25172728 Vra9g0009 9 93529 94782 PCT