Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1944 ATGTGGAGTTCTACTTCAAGCATAGCGATTGCAGCACCCTCCTCCGACGAGGATCCCAGCCAGTCCTCTTCGTCTTCCTTCTCCACTTCTCTCTTCAACTTCTCTTCTGGAAACCCTACAATCGAAGAGACCCGTGGCCTCATGCATCTATTCCCCGATGACGTTCCTGCTACTCTTCCTGTTGGACGCAAACCTCTTGTTTGCGTTGTCGGCGTCCCCAATCACATGACTTATGCGGATTTCTGTCAGTTCTGTGGTTCCTTCATTCAACACATGCTAGAGATGCGCATTGTTAGGATGGACGGTATGGAGGATCAGTATAGTGTCTTGATTCGCTTTGACCACCAAGACTCCACCGACAGCTTCTTCAAGCACTACCATGGCCGCCGATTCTCCTCTCTCGAGGTTGAGGTTTGCCGAGTTCTTTTCACGTTAGACGTGCAGTACACTGGTTCCATTGAACATGCGCAACCCTCAAATGCCAGCTCAACTGAACAGCCAACTTGTCCTGTTTGTCTTGAGCGATTAGATCAAGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCCGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCGATTTGTTTTGTCTGTCAAACCACTGAGAACCTGTGGATATGCGTTATATGTGGGCATGTTGGCTGCGGAAGATACAAGGGAGGGCATGCTATAATACACTGGAAAGAGACGCAGCATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTGTGGGATTATGTGGGAGACAATTATGTTCACAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAACGCTCACTGTGCACACGCAGATAATGAATGTGGAAGTTGCAGCTGTGAAGACAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAAATTTATTTTGAATCCTTATTAGAAGAAGTAAAAGAAGAATCCGAAAGAAAAATTTCCAAAGCTGTTCAGAAGGCTATCAATCTTAAACAACAGAAGATTCAGTCCAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGACATTTGGAAAGCAAAGATACTTGAGATTGAAGAGAGGGAGAGAAAAACTACGAGAATAATGGAGGATAGAGTAGCGAAGCTGGAAAAGCAGCTTGGAGATCTCATGGTTTGTCTTGAGGGGGGGAAGATGGTAGAAGAGCTACCCGTTTCAGATGATGAGATTAAAGAAGGGACTGTATTTCAAAAATCGAAGGAATCATCCTCAATTAGTGCTTCTCAGCAGCAGGAAGGAGAATACACGCATGCATAA 1449 0.4362 MWSSTSSIAIAAPSSDEDPSQSSSSSFSTSLFNFSSGNPTIEETRGLMHLFPDDVPATLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDHQDSTDSFFKHYHGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGHVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCAHADNECGSCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKIYFESLLEEVKEESERKISKAVQKAINLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEDIWKAKILEIEERERKTTRIMEDRVAKLEKQLGDLMVCLEGGKMVEELPVSDDEIKEGTVFQKSKESSSISASQQQEGEYTHA* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1944 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 288 IPR013083 -
Vra5g1944 482 ProSiteProfiles Zinc finger UBP-type profile. 203 296 IPR001607 GO:0008270
Vra5g1944 482 Pfam Zn-finger in ubiquitin-hydrolases and other protein 220 279 IPR001607 GO:0008270
Vra5g1944 482 CDD RRM_BRAP2_like 67 148 - -
Vra5g1944 482 Pfam BRCA1-associated protein 2 60 156 IPR011422 -
Vra5g1944 482 Coils Coil 378 398 - -
Vra5g1944 482 MobiDBLite consensus disorder prediction 461 482 - -
Vra5g1944 482 ProSiteProfiles Zinc finger RING-type profile. 169 209 IPR001841 -
Vra5g1944 482 SUPERFAMILY RING/U-box 185 284 - -
Vra5g1944 482 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g1944 482 CDD RING-H2_BRAP2 167 210 - -
Vra5g1944 482 PANTHER BRCA1-ASSOCIATED PROTEIN 14 473 - -
Vra5g1944 482 MobiDBLite consensus disorder prediction 456 482 - -
Vra5g1944 482 Coils Coil 334 372 - -
Vra5g1944 482 SMART Zf_UBP_1 219 268 IPR001607 GO:0008270
Vra5g1944 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 211 IPR013083 -
Vra5g1944 482 SMART ring_2 169 208 IPR001841 -
Vra5g1944 482 Pfam Ring finger domain 168 209 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1944 Vra-Chr5 25166865 25170067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1944 165 209 C3H Transcription Factor Family AT1G72220 46.809 5.94e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1944 K10632 - gmx:100794688 815.068