Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1941 ATGGATTATTCATCACGGATTAACACTTCATTGGATCTCAATCTCAATCCTCGCAGGCTGCACGAAGAACTTCCCAAAAAGGAGGTGGAACACAATTTTTTCTCTTTGGGGGTGAAGAAATCTTCTGTAAAAGAACAGCAGTCTTCCAGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGACCGAAATGCTGACGGAGATGTGTGAGAACTACAACGCTATGCGAAGCAATTTGATGGAATATATGAGAAAGAATCCTGATAAGGAGCAAAGCTCGTCGAAGAAAAGGAAGTCAGAAAACAGCTTCAACAATAGTGCTCCGAAGAGCATGCACGGAAACTCCGAGAGCAGCTCAACCGATGAAGAATCATGCAAGAAACCAAAGGAAGACATCAAGTCACCAGTTTCAAAAGTTTACGTGAGGACAGAAGCATCTGATACAAGCCTGATTGTGAAAGATGGATATCAGTGGAGGAAATACGGACAAAAGGTTACCAGGGATAACCCTTCTCCAAGAGCTTACTTCAAGTGCTCTTTTGCTCCAAGCTGCCCGGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACGTATGAAGGAGAGCACAATCATCCCCACCCTTCTCAAATGGAGCCAACCGCAGGCTCCAATCGTGGTGTGACCCCATGTTCAGGGTCTCTCAGCTCTTCCGCACCAACAACAGTTACCCTTGACTGGACAAAATCCAAGTCCAGCACCGATTCCAAGAACATAACTCCCAAAATGGATGCACCACAAATCCCTCAGGTTTTGGTAGAACAGATGGCCACTTCCCTGACCAAGGATCCTAATTTCAGAGCAGCACTACTTGCCGCAATCTCAGGAAAAATGTTGCACAATAATTGA 918 0.4553 MDYSSRINTSLDLNLNPRRLHEELPKKEVEHNFFSLGVKKSSVKEQQSSSALVEELKRVSAENKKLTEMLTEMCENYNAMRSNLMEYMRKNPDKEQSSSKKRKSENSFNNSAPKSMHGNSESSSTDEESCKKPKEDIKSPVSKVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSQMEPTAGSNRGVTPCSGSLSSSAPTTVTLDWTKSKSSTDSKNITPKMDAPQIPQVLVEQMATSLTKDPNFRAALLAAISGKMLHNN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1941 305 MobiDBLite consensus disorder prediction 220 243 - -
Vra5g1941 305 Gene3D WRKY domain 141 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g1941 305 MobiDBLite consensus disorder prediction 103 123 - -
Vra5g1941 305 SUPERFAMILY WRKY DNA-binding domain 154 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g1941 305 PANTHER TRANSCRIPTION FACTOR 1 305 - -
Vra5g1941 305 MobiDBLite consensus disorder prediction 91 139 - -
Vra5g1941 305 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1941 305 MobiDBLite consensus disorder prediction 124 139 - -
Vra5g1941 305 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 305 IPR044810 GO:0003700
Vra5g1941 305 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1941 305 MobiDBLite consensus disorder prediction 212 243 - -
Vra5g1941 305 Pfam WRKY DNA -binding domain 158 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1941 305 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1941 Vra-Chr5 25151546 25153527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1941 34 305 WRKY Transcription Factor Family AT1G80840 57.241 5.19e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g1941 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1941 - - gsj:114388658 473.396