Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1940 ATGGATCGCAGATCCAATGGCACCGGTGGCAGCAGGAACATCCTGTTCAACAAGTACGAGATAGGGAAGCTGCTGGGGCAGGGGAACTTCGCCAAAGTGTACCACGGGAGAAACCTCAGCACAAACGACAGCGTGGCCATCAAGGTCATAAAAAAAGAGAAGCTTCAGAAGGATAAGCTGGTGAAACAGATAAAGCGCGAGGTCTCCGTCATGCGCTTGGTTCGTCACCCCCACATCGTGGAACTCAGAGAGGTTATGGCCAACAAAGCCAAGATCTTCTTGGTCGTTGATTACGTCAAGGGAGGAGAACTCTTCGCCAAGGTGGCCAAAGGAAAGATGAAGGAAGAAATCGCCCGGAAATACTTTCAACAGCTGATCAGCGCCGTCGACTTCTGCCACAGTCGTGGCGTCACCCACCGTGATTTGAAGCCGGAGAATCTGCTCCTCGACGAGAACGAAGACCTGAAAGTATCAGACTTTGGCTTGTCTGCGCTGCCTGACCAGCGCAGATCTGACGGGATGCTCGTGACGCCGTGCGGCACGCCGGCCTACGTGGCGCCGGAGGTTCTGAAGAAGAAGGGCTACGATGGGTCGAAGGCTGATATATGGTCTTGTGGGGTGATCCTCTTCGCGCTTCTTTCTGGGTATTTGCCCTTTCAGGGTGAGAATGTGATGAGGATTTACAGCAAGTCTTTCAAAGCCGATTATGCATTCCCGGAATGGATTTCTCCCGGGGCCAGAAGCTTGATCTCTAATTTGCTGGTCGTGGACCCAGAGAAGAGGTATTCCATTCCTGACATCATGAAGGATCCTTGGTTCCAAGTTGGGTTCATGCGCCCCATTGCGTTTTCCATGAAGGAGACGGCTGTGGATGATAACATCGACTTCAACGGGGACGATGCCGGTGGCAGTGGAAACGTTAGCGGCAGCGAAGATAATAACAGCACCAGCAGCACCAGCAGCAGCAGCAACAACCATTCTGGGGAACTGATCGGAGCCAAGCCGGCTCGTCCGTCTTACAATGCTTTCGAGATAATATCCTCGCTGTCGCACGGGTTTGATCTGAGTAATCTGTTTGAGACGAGGAAGCGATCGCCGTCGATGTTCATATCGAAGCACTCGGCGTCGTCGGTGATGGCGAAGCTGGAGGCGGTGGCGAAGAAGCTGAACTTTAGGGTGACGGGGAAGAAGCAGTTCACGGTGAGAATGCAGGGAGCGACGGAAGGGAGGAAGGGGAAGCTGGGGATGACGGTAGAGGTGTTCGAGGTGGCGCCGGAGGTGGCGGTGGTGGAGTTTTCGAAGTCTGCCGGAGACACGCTTGAATACATAAAGCTGTGCGAGGAAGAAGTGAGGCCTTCGCTGAAAGACATCGTGTGGAGTTGGCAAGGGGACAGCAATTCCCGCCAGTGA 1410 0.5397 MDRRSNGTGGSRNILFNKYEIGKLLGQGNFAKVYHGRNLSTNDSVAIKVIKKEKLQKDKLVKQIKREVSVMRLVRHPHIVELREVMANKAKIFLVVDYVKGGELFAKVAKGKMKEEIARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLVTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLSGYLPFQGENVMRIYSKSFKADYAFPEWISPGARSLISNLLVVDPEKRYSIPDIMKDPWFQVGFMRPIAFSMKETAVDDNIDFNGDDAGGSGNVSGSEDNNSTSSTSSSSNNHSGELIGAKPARPSYNAFEIISSLSHGFDLSNLFETRKRSPSMFISKHSASSVMAKLEAVAKKLNFRVTGKKQFTVRMQGATEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYIKLCEEEVRPSLKDIVWSWQGDSNSRQ* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1940 469 Gene3D Kinase associated domain 1, KA1 336 460 - -
Vra5g1940 469 Pfam NAF domain 339 394 IPR004041 GO:0007165
Vra5g1940 469 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1940 469 MobiDBLite consensus disorder prediction 294 331 - -
Vra5g1940 469 Gene3D Transferase(Phosphotransferase) domain 1 11 331 - -
Vra5g1940 469 PANTHER - 11 467 - -
Vra5g1940 469 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1940 469 MobiDBLite consensus disorder prediction 303 329 - -
Vra5g1940 469 SUPERFAMILY Protein kinase-like (PK-like) 15 274 IPR011009 -
Vra5g1940 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vra5g1940 469 ProSiteProfiles NAF domain profile. 335 360 IPR018451 GO:0007165
Vra5g1940 469 CDD CIPK_C 341 455 - -
Vra5g1940 469 PANTHER CBL-INTERACTING PROTEIN KINASE 16 11 467 - -
Vra5g1940 469 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1940 469 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1940 Vra-Chr5 25140261 25142357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1940 12 467 CBL-interacting serine-threonine protein kinases AT5G10930 58.952 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra5g1940 Pkinase 3.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1940 - - gmx:100804244 777.319