Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1939 ATGCTGATCAACGTCAAGGAATCCACCATGGTGCGCCCGGCGGAGGAGACGCCGCGGACGCCGCTGTGGAATTCCAACGTCGATTTGGTGGTGCCAAACTTCCACACGCCCAGCGTCTATTTCTATAGGCCAAACGGGGCCTCCAATTTCTTCGACACAACCGTTATGAAGGAGGCTCTCGGTAAGGCCCTCGTCCCTTTCTACCCCATGGCCGCCCGCCTCCGCCGCGACGACGACGGTCGCGTCGAGCTTTTTTGCGACGGTCAGGGAGTGCTCTTCGTCGAGGCTGACACCACCGCCGCCATCGATGACTTCGGCGACTTCTCACCCACCCTTGAGCTCCGGCAGCTCATCCCCGCCGTGGATTATTCTGCCGGGATCGAAACTTATCCGCTCTTAGTGCTTCAGGTAACATATTTCAAATGTGGAGGAGTGTCATTAGGAGTTGGTATGCAACACCATGTAGCAGATGGAGCATCGGGTCTTCATTTCATCAATTCATGGTCCGATGTTGCTCGAGGTTTGGATGTTTCCCTCCCTCCGTTCATCGACAGGACACTGCTCCGTGCTCGTGATCCACCTCGTCCTGTTTTTGATCACATTGAATACAAGCCTGCACCCACCATGAAGACGAACCTGCAACCCCAAAAACCAGGCTCTGATGACCCTGCCACTGCCACTGCCGTCTCCACTTTCAAACTCACCCGTGACCAACTCAACAGCCTCAAGGCTAAGTCCAGAGAAGATGGCAACTCAATCAGCTATAGCTCTTATGAAATGCTGGCCGGTCATGTATGGAGAAGTGTCTGCAAGGCAAGAGCACTCCCTCATGACCAAGAAACCAAATTGTATATTGCAACTGATGGAAGGTCAAGGCTGCAACCTCCCCTTCCCCCTGGTTACTTTGGCAATGTCATCTTCACCGCCACTCCTGTAGCAGTGGCCGGCGATCTCATGTCAAAACCAACATGGTATGCTGCCAGCAGAATCCACGATGCGTTAATTCGAATGGACAACGAATATTTGAGATCAGCTCTTGACTATCTAGAGCTACAGCCTGATCTAAAAGCGCTTGTTCGTGGATCACATACTTTTAGGTGTCCCAACCTCGGCATCACTAGCTGGGTAAGGCTTCCAATCCATGATGCTGACTTTGGATGGGGAAGACCCATTTTCATGGGACCTGGTGGGATTGCCTACGAGGGGCTTTCTTTCATTATTCCCAGCTCTACAAATGATGGCAGCATGTCTGTGGCTATCGCTCTTCCTCCTGACCGAATGAAAGTGTTTCAGGATTTGTTTTATGACTTTTGA 1314 0.5198 MLINVKESTMVRPAEETPRTPLWNSNVDLVVPNFHTPSVYFYRPNGASNFFDTTVMKEALGKALVPFYPMAARLRRDDDGRVELFCDGQGVLFVEADTTAAIDDFGDFSPTLELRQLIPAVDYSAGIETYPLLVLQVTYFKCGGVSLGVGMQHHVADGASGLHFINSWSDVARGLDVSLPPFIDRTLLRARDPPRPVFDHIEYKPAPTMKTNLQPQKPGSDDPATATAVSTFKLTRDQLNSLKAKSREDGNSISYSSYEMLAGHVWRSVCKARALPHDQETKLYIATDGRSRLQPPLPPGYFGNVIFTATPVAVAGDLMSKPTWYAASRIHDALIRMDNEYLRSALDYLELQPDLKALVRGSHTFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSMSVAIALPPDRMKVFQDLFYDF* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1939 437 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 436 - -
Vra5g1939 437 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 4 436 - -
Vra5g1939 437 Pfam Transferase family 3 435 - -
Vra5g1939 437 Gene3D - 1 205 IPR023213 -
Vra5g1939 437 Gene3D - 219 437 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1939 Vra-Chr5 25130114 25132863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1939 1 436 Monolignol Biosynthesis Gene Families AT5G48930 77.064 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1939 K13065 - gmx:100801923 797.349