Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1936 ATGCCTTCAAGACCCTTTCCTCCGACAAGTCCCACCAAAACCAAGGCCCTCTTCCTAGCACTCACCATTTCAGCTTGTGTTGTTATTTTCTGCTCAGTTGTTTACTTCCTCTACCATCTGTGGCTTTCTCTAGTTCATAGAGCTAAGACCATCCCCTTTGATGCAAGTGCTCCCTTGAAGCTTCAAAGATTCTCGTACAAAGATTTAAAGCAGGCCACCAATGGCTTCGATACTGCCAATGTAATTGGCAAAGGCGGCTCTGGCACTGTTTTCAGAGGCGTACTTAAAGACGGCAAGTTGATTGCCATCAAGCGTCTGGACGCATTGTCTTTGCAGTCTGAGAGAGAGTTTCAAAACGAGCTGCAGATTCTTGGAGGGTTAAGGTCACCATTCTTGGTGACTCTTTTGGGTTACTGTGTGGAAAGGAACAAAAGAGTGCTGGTTTATGAGTATATGCCCAACAGAAGCTTGCAGGAGTCCCTCTTTGGAGATGAGGGTTTGAGTTTGAGTTGGGAGAGAAGGTTTTGCATAATATTGGATGTTGCTAGAGCTATGGAGTTCTTGCACCTTGGATGTGATCCTCCGGTGATCCATGGTGATATCAAGCCAAGCAATGTTCTGCTTGATGCAGAGTGGCGTGGGAAGATCTCCGACTTTGGCTTGTCAAGGATTAAGGTGGAGGGTGAATTTGGTGTTGACTTGTTTAGCCAGGACCTAGGGAGGAGCCAGGATCTATGGAAAAGCCAAGAGCTTTCAGGTAATTTGACTAATTTGACTGCAGAAACTCCTGCTATTGGTACTCCGGTTGAGAGTGTCAGTGAAGTAGATTTCGCTCTAGCTTTGCAAGCCTCTTCTTCATCAAAAAATAGTAGGACCTGCTTTAATGTTAAAGCTTTGAATTTGAATTCTTTGAATTATAATGCCAATATTGCTGGTGAAAGTGAAATCAGGAATGTGAATGCAAAGGGTAAAGAAATTTCAGCTTTGGATAGAGATGATTGGAATGGTAAGTTTTTTCCTTATGATGATGAGCTTTCTAGCATTGATTATAGTAAGGAGTTAACAGTGAACGCTTCTCCTTTGGTGGATGATGAGAAGGCAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAGACAGGATGGAAGCGGGGAGTTATGTAGTAAAGACTATGTTATGGAGTGGATTGGGAGTCAGATTTGTCCATCAAACCCTGATTGGGATCATGGTAAGAACAATGCTCACGAGAAAGTGGAATTGGAAACTTCAAGCCCAAAGGATAAAGACCAAGATGCAATTGCACCCCAGACACAGGTGTTTGGGATAGGACACAATACTACAGATAATGGGATTGAGAAAAAACAGTCAAGGGGAAAGAAAAATCACAAAAAGAAACACAGGAAGATGCAAGAATGGTGGAGAGAAGAGCATCTAGCTGAATTAAGCAAGAAGACAAATAAACTGAAAAATCTTCACTCTAAATGGAAGAAAGGCATGAAAGTGCCCCATTTTGATTTGGGTAGAAGGTTTTATCTTTGCAGACGTAAGAAGTTTGGAGAGGAGGGTCAGGATGAATGTGATCAAAATGGGGAGTTTAGCTTCAGAAGAGGCTGGAAGAAAAAGAGTACTCTTTCCATTGGTAGTGACATGTGGAGTGGAGATCTTTTCAGCCGCGAGCTTAGCAGCACAACTAGCATGAGAGGGACACTGTGTTATGTGGCACCAGAATATGGAGGGTGTGGATTCTTGATGGAGAAAGCTGATATTTATAGTTTTGGAGTTTTGATTCTTGTAATCGTGTCAGGTAGGAGACCGTTACATGTTCTTGCATCACCCATGAAGCTAGAGAAAGCAAACCTGATAAGCTGGTGTAGACACTTGGCTCAAGCTGGTAACATTTTAGAACTAGTGGATGAGAGATTGAAAGAAGATTTCAACAAGGAGCAAGCAAGCCTGTGTATCAATTTGGCACTCACTTGCTTACAGAAAATCCCTGAGTTGAGGCTAGATATTGGGGATATTGTTAAGATTTTGAAGGGGGAGATGGATCTTCCACCACTTCCATTTGAGCTCTCCCCTTCTCCACCTTCCAAATTATACGGCAAAGCAAGGAGAAAACAGAAGATCACTGCAGAATAG 2139 0.4296 MPSRPFPPTSPTKTKALFLALTISACVVIFCSVVYFLYHLWLSLVHRAKTIPFDASAPLKLQRFSYKDLKQATNGFDTANVIGKGGSGTVFRGVLKDGKLIAIKRLDALSLQSEREFQNELQILGGLRSPFLVTLLGYCVERNKRVLVYEYMPNRSLQESLFGDEGLSLSWERRFCIILDVARAMEFLHLGCDPPVIHGDIKPSNVLLDAEWRGKISDFGLSRIKVEGEFGVDLFSQDLGRSQDLWKSQELSGNLTNLTAETPAIGTPVESVSEVDFALALQASSSSKNSRTCFNVKALNLNSLNYNANIAGESEIRNVNAKGKEISALDRDDWNGKFFPYDDELSSIDYSKELTVNASPLVDDEKANGKQWGKDWWWRQDGSGELCSKDYVMEWIGSQICPSNPDWDHGKNNAHEKVELETSSPKDKDQDAIAPQTQVFGIGHNTTDNGIEKKQSRGKKNHKKKHRKMQEWWREEHLAELSKKTNKLKNLHSKWKKGMKVPHFDLGRRFYLCRRKKFGEEGQDECDQNGEFSFRRGWKKKSTLSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGNILELVDERLKEDFNKEQASLCINLALTCLQKIPELRLDIGDIVKILKGEMDLPPLPFELSPSPPSKLYGKARRKQKITAE* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1936 712 ProSiteProfiles Protein kinase domain profile. 76 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1936 712 PANTHER OS08G0275200 PROTEIN 1 711 - -
Vra5g1936 712 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Vra5g1936 712 Pfam Protein kinase domain 78 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1936 712 Gene3D Transferase(Phosphotransferase) domain 1 538 684 - -
Vra5g1936 712 Gene3D Transferase(Phosphotransferase) domain 1 152 263 - -
Vra5g1936 712 MobiDBLite consensus disorder prediction 691 712 - -
Vra5g1936 712 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Vra5g1936 712 SUPERFAMILY Protein kinase-like (PK-like) 56 697 IPR011009 -
Vra5g1936 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vra5g1936 712 Coils Coil 474 494 - -
Vra5g1936 712 SMART serkin_6 76 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1936 712 PANTHER OS07G0586332 PROTEIN 1 711 IPR044576 -
Vra5g1936 712 MobiDBLite consensus disorder prediction 441 465 - -
Vra5g1936 712 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1936 Vra-Chr5 25111938 25114770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1936 546 678 Receptor kinase-like Gene Family AT3G58690 29.851 1.14e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vra5g1936 Pkinase 3.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1936 - - gmx:100807432 1328.15