Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1930 ATGGACAATAACGAGGAAATCCCTTCAACACCTGCCACACCAGGCACTCCAGGTGCACCTCTTTTTGGAGGTTTCACCAATGCCACCAACAGGTCTAATAACAAGAACTCTCTTCTCAAGAGTTGTAGATGCTTCACTGTGGCGGATTGGAGCATAGAAGATGGAGCTTTACCACCCGTCTCATGTTCTTTGCCACCACCTCCTCATGTTCCTTTGGCAAGAAAGATTGGTGCTGAGTTCATTGGAACCTTCATTCTCATGTTTGCTGCTACTGCCGCTGCCATTGTCAACCAGAAAACAAACGGCTCTGAGACCCTCATAGGTTGTGCTGCCACCACTGGTCTCGCCGTTATGATAGTCATCCTCGCCACTGGTCACATCTCTGGTGCTCATCTCAATCCAGCTGTCACTCTTTCCTTTGCTGCATTGAAGCACTTTCCTTGGAAACATGTACCTATGTATATTGGTGCACAAATTTTGGCATCGATTTGTGCTGCATTTGCTCTTAAAGGGGTTTATCATCCTTTCATGAGTGGTGGAGTCACAGTTCCTTCTGGAGGATATGGTCAATCTTTCGCTTTAGAATTCATTATTACCTTCAATCTAATGTTTGTTGTCACAGCAGTTGCCACCGACACTAGAGCTGTGGGAGAACTGGCGGGAATTGCGGTAGGAGCCACTGTGATGCTCAACATCCTTATAGCAGGGCCAGTATCAGGCGGTTCAATGAACCCAGTAAGAACACTAGGTCCTGCTGTTGCAGCAAACAACTACAAAGCTATATGGGTTTATCTGATAGCTCCAGTACTTGGAGCTTTAGCGGGTGCAGGTACTTACACTGCAGTAAAACTGTCCGAAGAAAACGATGATGCCAATGCAAAGGCTTCAATCAGCTTCAGAAGATGA 906 0.4647 MDNNEEIPSTPATPGTPGAPLFGGFTNATNRSNNKNSLLKSCRCFTVADWSIEDGALPPVSCSLPPPPHVPLARKIGAEFIGTFILMFAATAAAIVNQKTNGSETLIGCAATTGLAVMIVILATGHISGAHLNPAVTLSFAALKHFPWKHVPMYIGAQILASICAAFALKGVYHPFMSGGVTVPSGGYGQSFALEFIITFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAVAANNYKAIWVYLIAPVLGALAGAGTYTAVKLSEENDDANAKASISFRR* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1930 301 Gene3D Glycerol uptake facilitator protein. 68 295 IPR023271 -
Vra5g1930 301 CDD MIP 74 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1930 301 ProSitePatterns MIP family signature. 131 139 IPR022357 -
Vra5g1930 301 PRINTS Major intrinsic protein family signature 74 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1930 301 PRINTS Major intrinsic protein family signature 113 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1930 301 PRINTS Major intrinsic protein family signature 150 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1930 301 PRINTS Major intrinsic protein family signature 194 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1930 301 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1930 301 PRINTS Major intrinsic protein family signature 262 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1930 301 PANTHER AQUAPORIN NIP2-1 6 294 IPR034294 -
Vra5g1930 301 MobiDBLite consensus disorder prediction 1 26 - -
Vra5g1930 301 Pfam Major intrinsic protein 70 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1930 301 PANTHER BNAA02G36290D PROTEIN 6 294 - -
Vra5g1930 301 SUPERFAMILY Aquaporin-like 70 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1930 Vra-Chr5 25076994 25080173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1930 3 301 Major Intrinsic Protein MIP AT1G80760 74.267 1.20e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1930 K09874 - gmx:100815637 496.893