Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1928 ATGCCTTCTGCCGAATCATTGCCACCTTCCTCCCAAACAATCTGTGTCACTGGCGCCGGTGGCTTCATAGCATCTTGGATGGTAAAACTTCTCTTGGAGAAAGGCTACACTGTGAGAGGAACACTCAGAAACCCAGATGATCCCAAGAACGGACACTTGAAAGAGTTTGAAGGAGCCTCCGACAGACTAACTCTGCATAAGGTTGACCTCCTTGACGTTGACTCCGTTAGATCAGTAATTCACGGCTGCCATGGTGTCTTTCACACAGCTTCTCCCGTCACTGATAACCCCGAAGAAATGGTGGAGCCAGCGGTGAATGGAGCGAAGAATGTTATCATAGCAGCTGCAGAGGCAAAAGTGCGACGTGTGGTGTTCACCTCATCGATTGGTGCCGTATACATGGACCCCAAAAGGAGCATCGATTTGGTGGTTGACGAGTCTTGTTGGAGTGATTTAGAGTATTGCAAGAACACTAAGAATTGGTACTGCTATGGGAAAGCTGTGGCTGAACAAGCAGCATGGGACACTGCCAAAGAAAAAGGAGTGGACTTGGTTGTAGTGAACCCAGTATTGGTTCTTGGACCATTACTACAACCAACCATCAATGCTAGCACGATTCACATCCTCAAGTACCTCACTGGCTCTGCTAAGACCTATGCAAATGCCACACAGGCTTATGTGCATGTGAGGGATGTGGCATTGGCCCACATACTTGTTTATGAGAAGTCTTCTGCTTCTGGTCGATACTTATGTGCTGAAAGCTCCCTGCACCGTGGAGAACTAGTTGAAATTCTGGCGAAGTATTTCCCTGAGTACCCAGTTCCCACCAAGTGTTCCGATGAAAAGAACCCCAGGGCAAAACCATACACCTTTTCAAACCAGAAGCTCAAAGATTTGGGATTGGAATTCACTCCAGTGAGTCAGTGTTTGTATGAAACGGTTAAGAGTCTGCAGGAGAAAGGGCACCTTCCTGTTCCTGCAAAGCAGGAAGATTCAGCTACAGTGAAATCATGA 1014 0.4744 MPSAESLPPSSQTICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKEFEGASDRLTLHKVDLLDVDSVRSVIHGCHGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPKRSIDLVVDESCWSDLEYCKNTKNWYCYGKAVAEQAAWDTAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKSSASGRYLCAESSLHRGELVEILAKYFPEYPVPTKCSDEKNPRAKPYTFSNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPVPAKQEDSATVKS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1928 337 Pfam NAD dependent epimerase/dehydratase family 14 244 IPR001509 -
Vra5g1928 337 CDD FR_SDR_e 15 301 - -
Vra5g1928 337 Gene3D - 6 337 - -
Vra5g1928 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 318 IPR036291 -
Vra5g1928 337 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 9 327 - -
Vra5g1928 337 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1928 Vra-Chr5 25064678 25067599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1928 11 277 Monolignol Biosynthesis Gene Families AT1G80820 74.157 7.68e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1928 K09753 - gmx:100789070 625.935