Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1927 ATGGCTATCACAGGTTCTGGTTCCGGGCAGCCACAATTCATTTCGAGCACTGGCAACCGAAGCTTTTCCAATGCGCCACTCATTGAGAACTCAGATACTAATCAAGTTGTTGTGCCTGATAGGAGAAGCTGGAAAAATTTATTTGCCTACATGGGGCCTGGATTTCTTGTATCCATTGCATACATAGACCCAGGGAACTTTGAGACGGATCTTCAGGCTGGGGCACAATATAAATATGAGTTACTTTGGATCATTTTGGTGGCATCATGTGCTGCTCTTGTTATTCAATCAATGGCAGCAAATCTTGGGGTGGTCACTGGAAAACACTTAGCAGAGCATTGTAGAACTGAATATCCCCGGGTGCCCAACTTCATCCTTTGGATTATTGCTGAAATTGCTATAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCACTGAACATGCTCTTCAACATACCCGTTTGGATTGGTGTTCTTCTGACAGGACTCAGCACATTGATCCTCTTGGCATTACAGCAATATGGGGTTAGGAAACTCGAATTCTTGATTGCATTTCTTGTGTTTACAATTGCTGCATGTTTTGTGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTACAAAGGGTCTTTTTGTGCCAGAACTAAAAGGAAATGGGGCAACTGGTCTCGCAATTTCCCTCCTTGGAGCTATGGTTATGCCGCACAATCTCTTCCTGCACTCAGCGCTGGTGCTGTCTAGGAAAATTCCACGATCAGTTCGGGGAATCAAGGAGGCTTGTAGCTTTTACATGATAGAAAGTGCCTTCGCTCTCTCGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGTGGTGCTGTTTGCAATTCTTCGAATTTGAATGCAGAAGATCAGATGAGCTGTCAGAATTTGGATCTGAACGAAGCCTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCGAAACTGTTTGGAATTGCTTTGCTTGCATCGGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAGTATGTTATGCAGGGATTTCTTGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCAGTCATTGGAGGATCAGCCGGAGCTGGGAAGCTCATAATAATTGCATCCATGATCTTATCATTTGAACTTCCTTTTGCTTTGGTTCCACTCCTCAAGTTTGCAAGCTGCAAAACTAAGATGGGGGCACATGTCAACTCTACCATGATTTCAGTTGTCACATGGATAATCGGTACCCTCATTATGGCCATTAACATATACTACCTGATGACTGGCTTCATCAAGCTGCTTCTCCATAGCCACATAGAAATTGTGGCTAAGGTGTTTCTTGGGATGATTGGATTTTCAGGCATGGCAATATATTTGGCAGGCATAGCCTATCTAGTACTCCGCAAAAATACAGAGGCTACACACCTTTTGGCTCTAACAGCATCAGAAAATCAACAAATGACAAATGAACAAGGCAATGGACCAATCTATTCTCTTCCAAGAGAAGACATAGTAAGCATGCAGTTGCCTCAAAGAAGTACTCCTGCTGATGTTGACTGA 1635 0.433 MAITGSGSGQPQFISSTGNRSFSNAPLIENSDTNQVVVPDRRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQYKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRTEYPRVPNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFVAELGYAKPDAKEVTKGLFVPELKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACSFYMIESAFALSVAFLINVCVISVSGAVCNSSNLNAEDQMSCQNLDLNEASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALVPLLKFASCKTKMGAHVNSTMISVVTWIIGTLIMAINIYYLMTGFIKLLLHSHIEIVAKVFLGMIGFSGMAIYLAGIAYLVLRKNTEATHLLALTASENQQMTNEQGNGPIYSLPREDIVSMQLPQRSTPADVD* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1927 544 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 10 544 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g1927 544 PANTHER METAL TRANSPORTER NRAMP1 10 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1927 Vra-Chr5 25058671 25063915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1927 3 544 Inorganic Solute Cotransporters AT1G80830 77.532 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1927 K21398 - gmx:100797298 986.482