Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1926 ATGATTAAAGTGAAGGAGTCGACAATGGTGCAACCTGCGGAGGCGACACCGCGGAAGGTATTGTGGAACTCAGATCTGGATTTGCTAGTGGGGAATTACCACACTCCCAGTGTCTATTTCTACAACCCAAACGGAGCTTCCAATTTCTTCCATTCCAACATCTTGAAAGAAGCTCTCAGTAAGACCCTCGTCCTTTTCTACCCAATGGCCGCCCGTCTCCGCCACGGTCACGACCACCGTGTCCAGATTTATTGTGACGGTCAAGGTGTACTTTTCGTTGAGGCTCATGCCACCGTTGCCATGGACCACTTCACTCAAAACCTTCACCATCGCAACCTTATCCCCACGGTGGATTATTCCGCCGGGATTGAGACATATCCGATAGTGGTGTTACAGATAACATATTTCAAATGTGGAGGGGTGTCATTAGGTGTCGGTCTACAACACCACGTAGCAGATGGAGCATCGGGGATTCACTTCATCAATGCATGGTCCGATGTGGCTCGTGGCTTCGGCATTTCCGTTCCTCCGTTCATTGACAAGACCCTACTTCGTGCCAGGGATCCACCTCAACCTGTTTTTCCTCACAACGAATACCAGCTGTCATCACCCACCACCGCGACCACCACCACCACCACTGTAGTTGCCTCTATCTTAAAATTGACTCGTCACCAACTGAGCACCCTCAAGGGTAAGTGGAAAGAAGGTGGCAACAGCATCAAGTATAGCACTTATGAGATGTTGGCAGCTCATATATGGATAAGTGTGTGCAAAGCAAGAGGCCTTGGTGATGAGCAAGAAACCAGACTGTATATTCCGATTGATGGAAGGTGGAGGCTGCAACCTCCCCTTCCTCCTGGTTACTTTGGCAATGTCATTTTCTCCACCGTTCCCGTCGCAGTGGTAGGAGAACTCGTGTCAAAACCTACATGGTATGCTGCAGACAAAATCCATAAAGCAATAATGAGAATGGACAACGAATATTTGAGGTCAGCTGTTGACTATCTAGAGCTACAACCTGATCTGAATGGTCTTGTTCGTGGGGCACATACTTTTGGGTGTCCCAATGTTGGCATCAATAGCTGGGTCAAGTTTCCGGTCTATGATGCTGACTTTGGTTGGGGAAGACCCATCTTCATGAGACCTGGTTGGATTATACACGAGGGGCTATCAATCATAACTCCAACATCAACGAATGATGGCAGCTTATACTTGACAATTGCTCTACCACCTCACCATATGAACTTGTTTCAACAATTCTTTTTTGAGATTTGA 1275 0.4761 MIKVKESTMVQPAEATPRKVLWNSDLDLLVGNYHTPSVYFYNPNGASNFFHSNILKEALSKTLVLFYPMAARLRHGHDHRVQIYCDGQGVLFVEAHATVAMDHFTQNLHHRNLIPTVDYSAGIETYPIVVLQITYFKCGGVSLGVGLQHHVADGASGIHFINAWSDVARGFGISVPPFIDKTLLRARDPPQPVFPHNEYQLSSPTTATTTTTTVVASILKLTRHQLSTLKGKWKEGGNSIKYSTYEMLAAHIWISVCKARGLGDEQETRLYIPIDGRWRLQPPLPPGYFGNVIFSTVPVAVVGELVSKPTWYAADKIHKAIMRMDNEYLRSAVDYLELQPDLNGLVRGAHTFGCPNVGINSWVKFPVYDADFGWGRPIFMRPGWIIHEGLSIITPTSTNDGSLYLTIALPPHHMNLFQQFFFEI* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1926 424 Pfam Transferase family 1 419 - -
Vra5g1926 424 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 423 - -
Vra5g1926 424 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 3 423 - -
Vra5g1926 424 Gene3D - 199 424 IPR023213 -
Vra5g1926 424 Gene3D - 1 198 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1926 Vra-Chr5 25052871 25054747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1926 2 424 Monolignol Biosynthesis Gene Families AT5G48930 61.432 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1926 K13065 - gmx:100801923 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1926 5 25052871 25054747 Vra5g1926 5 25052871 25054747 ECH
Vra5g1926 5 25052871 25054747 Vra9g0048 9 324021 326366 PCT